v0.14

• Bumping junit and guava dependency.
• Make compatible with new clinvar TSV file.

v0.13

• Bumping HTSJDK dependency.
• Fixing issue with empty "AD" fields.

v0.12

• Removing CNVetti::homdel support as it was a dead end.
• Fixing gCNV support.

v0.11

• Adding support for gCNV output.
• Adding support for CNVetti::homdel output.

v0.10

• Bumping Jannovar dependency (adds annotation of chrMT).
• Writing out distance to refseq/ensembl exon and adding placeholder for info field.
• Reading of updated clinvar and HGMD Public TSV.

v0.9

• Writing out case and set ID into all output tables.
• Fixing clinvar import into database.
• Initializing case and set ID parameters to ".".

v0.8

• Adding chromosome_no output column.

v0.7

• Bumping Jannovar dependency to v0.32.
• Refactoring columns of small and structural variant call file.
• Not writing out variant effects for small variants any more.
• Writing out overall allele frequency and not AF_POPMAX any more.
  This requires rebuilding the VarFish annotator database.
• Replacing pos and pos_end in database by start and end to make it consistent with created files.
• Properly matching variants by gene without duplicates (#6).

v0.6

• Adding support for XHMM FORMAT attributes.

v0.5

• Bumping Jannovar dependency (properly load SV type from SV2 output).
• Reading out FORMAT fields from SV2 output.