Skip to content
@vendruscolo-lab

vendruscolo-lab

Popular repositories Loading

  1. ab42-kinetic-ensemble ab42-kinetic-ensemble Public

    Code for "A kinetic ensemble of the Alzheimer's Aβ peptide"

    Jupyter Notebook 5 3

  2. amyloid-beta_small_mol amyloid-beta_small_mol Public

    Mathematica 3 2

  3. sdab-entropy sdab-entropy Public

    Comparison of the conformational entropy of designed and natural nanobodies

    Jupyter Notebook 3

  4. AlphaFold-IDP AlphaFold-IDP Public

    This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by using AlphaFold generated residue distance maps as constraint…

    Jupyter Notebook 3 1

  5. OpenMM-Plumed-MPI OpenMM-Plumed-MPI Public

    C++ 3 1

  6. ab42-g5-ensemble ab42-g5-ensemble Public

    Code for "A small molecule stabilises the disordered native state of the Alzheimer’s Aβ peptide"

    Jupyter Notebook 2 1

Repositories

Showing 10 of 12 repositories
  • AlphaFold-IDP Public

    This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by using AlphaFold generated residue distance maps as constraints in any prior-structural ensemble

    vendruscolo-lab/AlphaFold-IDP’s past year of commit activity
    Jupyter Notebook 3 GPL-3.0 1 0 0 Updated Dec 11, 2024
  • AlphaFold-MetaInference-Tutorial Public
    vendruscolo-lab/AlphaFold-MetaInference-Tutorial’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Nov 11, 2024
  • OpenMM-Plumed-MPI Public
    vendruscolo-lab/OpenMM-Plumed-MPI’s past year of commit activity
    C++ 3 1 0 0 Updated Oct 23, 2024
  • PEABS-LC-MS Public Forked from odedrim/PEABS-LC-MS

    tools for quantitative analysis of intact protein LC-MS for PEABS

    vendruscolo-lab/PEABS-LC-MS’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Feb 19, 2024
  • ab42-kinetic-ensemble Public

    Code for "A kinetic ensemble of the Alzheimer's Aβ peptide"

    vendruscolo-lab/ab42-kinetic-ensemble’s past year of commit activity
    Jupyter Notebook 5 GPL-3.0 3 0 0 Updated Jul 14, 2022
  • sdab-entropy Public

    Comparison of the conformational entropy of designed and natural nanobodies

    vendruscolo-lab/sdab-entropy’s past year of commit activity
    Jupyter Notebook 3 0 0 0 Updated May 25, 2022
  • ab42-g5-ensemble Public

    Code for "A small molecule stabilises the disordered native state of the Alzheimer’s Aβ peptide"

    vendruscolo-lab/ab42-g5-ensemble’s past year of commit activity
    Jupyter Notebook 2 GPL-3.0 1 0 0 Updated May 24, 2022
  • IAPP Public
    vendruscolo-lab/IAPP’s past year of commit activity
    Shell 0 0 0 0 Updated May 4, 2022
  • tau-microtubules Public
    vendruscolo-lab/tau-microtubules’s past year of commit activity
    Shell 0 0 0 0 Updated Mar 8, 2022
  • Spike-OpeningTransitionEnsemble Public

    GROMACS-PLUMED input and analysis in manuscript "Determination of Intermediate State Structures in the Opening Pathway of SARS-CoV-2 Spike Using Cryo-Electron Microscopy"

    vendruscolo-lab/Spike-OpeningTransitionEnsemble’s past year of commit activity
    0 GPL-3.0 0 1 0 Updated Nov 25, 2020
View all repositories

Top languages

Loading…

Most used topics

Loading…