Haplotype path chunk #4426
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Haplotype path chunk #4426
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Update vg deconstruct error message to not be readable as about missing _alt_ paths, and use a libbdsg where the reference path overlay indexes all non-hidden paths (including e.g. haplotype paths from GFA).
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Changelog Entry
To be copied to the draft changelog by merger:
vg chunkcan now reference-index particular haplotype paths when requested.vg paths -oadded to apply aReferencePathOverlayHelperbefore looking at the paths.Description
This should fix vgteam/sequenceTubeMap#462