Port over orderly.sharepoint

.Rbuildignore

@@ -0,0 +1,12 @@
+^scripts$
+^Makefile$
+^README\.Rmd$
+^\.travis\.yml$
+^docs$
+^docker$
+^\.lintr$
+^\.hadolint\.yaml$
+^scripts$
+^.*\.Rproj$
+^\.Rproj\.user$
+^\.github$

.github/.gitignore

@@ -0,0 +1 @@
+*.html

.github/workflows/R-CMD-check.yaml

@@ -0,0 +1,49 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+
+name: R-CMD-check
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macos-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
+          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,   r: 'release'}
+          - {os: ubuntu-latest,   r: 'oldrel-1'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          upload-snapshots: true

.github/workflows/pkgdown.yaml

@@ -0,0 +1,48 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+  release:
+    types: [published]
+  workflow_dispatch:
+
+name: pkgdown
+
+jobs:
+  pkgdown:
+    runs-on: ubuntu-latest
+    # Only restrict concurrency for non-PR jobs
+    concurrency:
+      group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    permissions:
+      contents: write
+    steps:
+      - uses: actions/checkout@v3
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pkgdown, local::.
+          needs: website
+
+      - name: Build site
+        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
+        shell: Rscript {0}
+
+      - name: Deploy to GitHub pages 🚀
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/[email protected]
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs

.github/workflows/test-coverage.yaml

@@ -0,0 +1,50 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+
+name: test-coverage
+
+jobs:
+  test-coverage:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::covr
+          needs: coverage
+
+      - name: Test coverage
+        run: |
+          covr::codecov(
+            quiet = FALSE,
+            clean = FALSE,
+            install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package")
+          )
+        shell: Rscript {0}
+
+      - name: Show testthat output
+        if: always()
+        run: |
+          ## --------------------------------------------------------------------
+          find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
+        shell: bash
+
+      - name: Upload test results
+        if: failure()
+        uses: actions/upload-artifact@v3
+        with:
+          name: coverage-test-failures
+          path: ${{ runner.temp }}/package

.gitignore

@@ -0,0 +1,4 @@
+.Rhistory
+.RData
+.Rproj.user
+docs

.lintr

@@ -0,0 +1,4 @@
+linters: with_defaults(
+    cyclocomp_linter = NULL
+    )
+exclusions: list("tests/testthat.R")

DESCRIPTION

@@ -0,0 +1,26 @@
+Package: orderly.sharedrive
+Title: Shared drive remote for Orderly
+Version: 0.1.5
+Authors@R: c(person("Rob", "Ashton", role = c("aut", "cre"),
+                    email = "[email protected]"),
+             person("Imperial College of Science, Technology and Medicine",
+                    role = "cph"))
+Description: Store orderly reports on a shared drive. Provides an orderly
+    remote driver that can be used to share orderly reports using
+    a network drive or synced one drive. You can use this as a
+    a lightweight way of using orderly within a team.
+License: MIT + file LICENSE
+Encoding: UTF-8
+LazyData: true
+Language: en-GB
+Imports:
+    orderly1 (>= 1.7.0),
+    spud (>= 0.1.5),
+    zip
+Suggests:
+    mockery,
+    testthat
+Remotes:
+    reside-ic/spud,
+    orderly1=vimc/orderly@vimc-7135
+RoxygenNote: 7.0.2

LICENSE

@@ -0,0 +1,2 @@
+YEAR: 2020
+COPYRIGHT HOLDER: Imperial College of Science, Technology and Medicine

Makefile

@@ -0,0 +1,46 @@
+PACKAGE := $(shell grep '^Package:' DESCRIPTION | sed -E 's/^Package:[[:space:]]+//')
+RSCRIPT = Rscript --no-init-file
+
+all: install
+
+test:
+	${RSCRIPT} -e 'library(methods); devtools::test()'
+
+test_all:
+	REMAKE_TEST_INSTALL_PACKAGES=true make test
+
+# https://github.com/r-lib/roxygen2/issues/963
+roxygen:
+	@mkdir -p man
+	${RSCRIPT} -e "library(methods); devtools::document()"
+
+install:
+	R CMD INSTALL .
+
+build:
+	R CMD build .
+
+check:
+	_R_CHECK_CRAN_INCOMING_=FALSE make check_all
+
+check_all:
+	${RSCRIPT} -e "rcmdcheck::rcmdcheck(args = c('--as-cran', '--no-manual'))"
+
+README.md: README.Rmd
+	Rscript -e "options(warnPartialMatchArgs=FALSE); knitr::knit('$<')"
+	sed -i.bak 's/[[:space:]]*$$//' README.md
+	rm -f $@.bak
+
+
+pkgdown:
+	${RSCRIPT} -e "library(methods); pkgdown::build_site()"
+
+website: pkgdown
+	./scripts/update_web.sh
+
+vignettes:
+	${RSCRIPT} -e 'tools::buildVignettes(dir = ".")'
+	mkdir -p inst/doc
+	cp vignettes/*.html vignettes/*.Rmd inst/doc
+
+.PHONY: all test document install vignettes

NAMESPACE

@@ -0,0 +1,3 @@
+# Generated by roxygen2: do not edit by hand
+
+export(orderly_remote_sharepoint)