Run unit tests on Windows

Fix additional places where base_dir was broken due to missing separator #7460

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Run time

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Job	Run time
Generate Chunk Matrix	1s
Unit Tests - 1	3m 25s
Unit Tests - 2	2m 56s
Unit Tests - 3	2m 17s
Unit Tests - 4	3m 29s
Unit Tests - 5	2m 55s
Unit Tests - 6	2m 47s
Unit Tests - 7	4m 2s
Unit Tests - 8	2m 58s
	24m 50s