Run unit tests on Windows

Fix additional places where base_dir was broken due to missing separator #7462

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Run time

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Job	Run time
Generate Chunk Matrix	1s
Unit Tests - 1	3m 24s
Unit Tests - 2	3m 4s
Unit Tests - 3	2m 21s
Unit Tests - 4	3m 26s
Unit Tests - 5	3m 0s
Unit Tests - 6	2m 44s
Unit Tests - 7	3m 59s
Unit Tests - 8	2m 54s
	24m 53s