Run unit tests on Windows

Fix additional places where base_dir was broken due to missing separator #7465

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Run time

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Job	Run time
Generate Chunk Matrix	1s
Unit Tests - 1	3m 23s
Unit Tests - 2	3m 4s
Unit Tests - 3	2m 18s
Unit Tests - 4	3m 16s
Unit Tests - 5	2m 54s
Unit Tests - 6	2m 47s
Unit Tests - 7	4m 1s
Unit Tests - 8	2m 51s
	24m 35s