Run unit tests on Windows

Fix additional places where base_dir was broken due to missing separator #7468

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Run time

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Job	Run time
Generate Chunk Matrix	1s
Unit Tests - 1	3m 50s
Unit Tests - 2	3m 6s
Unit Tests - 3	2m 13s
Unit Tests - 4	3m 26s
Unit Tests - 5	3m 2s
Unit Tests - 6	2m 51s
Unit Tests - 7	4m 3s
Unit Tests - 8	2m 51s
	25m 23s