Run unit tests on Windows

Fix additional places where base_dir was broken due to missing separator #7470

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Run time

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Job	Run time
Generate Chunk Matrix	1s
Unit Tests - 1	3m 39s
Unit Tests - 2	2m 59s
Unit Tests - 3	2m 12s
Unit Tests - 4	3m 27s
Unit Tests - 5	2m 59s
Unit Tests - 6	2m 50s
Unit Tests - 7	3m 50s
Unit Tests - 8	2m 38s
	24m 35s