Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

added pep618 compliant config for backwards compat #7

Open
wants to merge 20 commits into
base: main
Choose a base branch
from
Open

added pep618 compliant config for backwards compat #7

wants to merge 20 commits into from
+1,256 −408

Conversation

AlexPatrie
Copy link
Contributor

@AlexPatrie AlexPatrie commented Feb 24, 2025 •
edited
Loading

  • Refactors pyproject.toml to parse ipython and notebook as optional dependencies, installable with either [ipython] or [notebook]. This fixes an issue where pyvcell is installed environment that already has ipython installed.
  • Adds AxisMetadata, ChannelMetadata, MeshVolumeRegion, MeshMetadata and ZarrMetadata to the pyvcell.data_model.zarr_types module for specification of metadata extracted from Result.zarr_dataset.
  • Adds a metadata @property to the Result class for convenient data introspection.

@AlexPatrie
added pep618 compliant config for backwards compat
fb6032d
@AlexPatrie
removed 618 pyproject because not fully supported in place for setup.py
9a59737
@AlexPatrie
added ipython and setuptools in setup and pyproject and fixed path in…
5bc87eb 
… simulation
@AlexPatrie
moved pkgs to setup optional
fa2c9e6
@AlexPatrie
fix: temp remove build system for backwards compat
f6c7c63
@AlexPatrie
added zarr metadata to result for post processing
cc6d731
@AlexPatrie
feat: added project version parser to setup.py
9b81e9e
@AlexPatrie
chore: dynamic installer in setup
39a0303
@AlexPatrie
update pyproject to add setuptools build
42669d7
@AlexPatrie
test modern pyproject build
4244b68
@AlexPatrie
test build system
a6cb7f8
@AlexPatrie
test install of groups as optional deps
5e83fbf
@AlexPatrie
chore: removed unused
41e1917
@AlexPatrie
chore: moved notebook to notebook option
52cd45a
@AlexPatrie
chore: added original groups to poetry spot and refactored optional
9dc4aca
@AlexPatrie AlexPatrie requested a review from jcschaff February 25, 2025 17:46
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@jcschaff jcschaff Awaiting requested review from jcschaff

Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
1 participant
@AlexPatrie