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The package has been moved to PNNL-Comp-Mass-Spec as MSnSet.utils. This repository may or may not be maintained.

vp.misc

Installation

Make sure package devtools is installed.

To install vp.misc run

devtools::install_github("vladpetyuk/vp.misc")

By default install_github does not compile vignettes. Thus to compile with vignettes use the following options.

devtools::install_github("vladpetyuk/vp.misc", build = TRUE, build_opts = c("--no-resave-data", "--no-manual"))

Description

This is a collection of misc custom functions. They are primarily geared towards proteomics/perhaps-other-omics data analysis using MSnSet or ExpressionSet as data containers.

  • heatmaps
  • colorschemes
  • nested linear models
  • wrappers for the machine learning routines
  • custom imputation
  • reading of MaxQuant and SkyLine data
  • handling PTM mapping