Merge pull request #65 from muschellij2/main

Similar Fix to GGIRread as GGIR

NEWS.md

@@ -0,0 +1,121 @@
+# Changes in version 1.0.2 (release date:??-??-2024)
+
+- Added a `NEWS.md` file to track changes to the package.
+- Stops interactive calling of `chooseCRANmirror` on `.onAttach` if interactive and CRAN mirror not set GGIR #1141.
+
+# Changes in version 1.0.1 (release date:03-06-2024)
+
+- Progress bar fixed, issue #63 (credits: John Muschelli)
+
+# Changes in version 1.0.0 (release date:27-03-2024)
+
+- GENEActiv no longer prints error to console when more data is requested 
+than is in the file because this is not an error, issue #58
+
+
+
+# Changes in version 0.3.3 (release date:24-01-2024)
+
+- When GENEActiv device battery runs low before downloading data the timestamp in the file header will default to 2010-9-16. This is now corrected by using the timestamp from the first page header instead, issue #56
+
+
+# Changes in version 0.3.2 (release date:05-12-2023)
+
+- Improved handling of failed checksum in .cwa files #53 (credits: Lena Kushleyeva)
+
+
+# Changes in version 0.3.1 (GitHub-only-release date:11-10-2023)
+
+- Now iterates through cwa files using native cwa blocks instead of 300
+sample pages.
+- Now properly accounts for unexpected high sampling rate for the imputation.
+- Deprecated option to iterate based on timestamps.
+- Deprecated readWav function, see #48 for justification.
+- This release already appeared on GitHub on 30 August but is now also submitted to CRAN
+
+
+# Changes in version 0.3.0 (release date:07-08-2023)
+
+- Improved imputation of faulty blocks readAxivity
+- Unit test added for AX6 files
+- License update to Apache 2.0.
+
+
+# Changes in version 0.2.10 (GitHub-only-release date:03-08-2023)
+
+- Fixed bug in temperature extraction Axivity cwa files (credits: Lena Kushleyeva)
+- readAxivity now able to recognise when AX6 has been configured without 
+gyroscope sensor and only provides accerometer data. Fixes #31 (credits: Lena Kushleyeva)
+- readAxivity refactored and faster (credits: Lena Kushleyeva)
+but also expanded with checksum check and sampling frequency check, 
+data blocks are imputed when checks fail and this is logged in the output. 
+The net speed improvement is approximately 15\%-20\%.
+
+
+# Changes in version 0.2.9 (GitHub-only-release date:20-07-2023)
+
+- Replace bug fix to resample function in 0.2.8 and instead fix the 
+issue inside readAxivity #33
+- Improvements to syntax for readGENEActiv and readGenea following R updates
+
+
+# Changes in version 0.2.8 (release date:26-05-2023)
+
+- Major bug fix introduced in 0.2.7 release affecting readAxivity #29
+- resample function now able to handle timestamps outside block as
+a result of large time gaps in cwa files #32
+
+
+# Changes in version 0.2.7 (release date:17-05-2023)
+
+- Fixes bug in LUX extraction for GENEActiv .bin data (#27)
+- Expanded Axivity .wav file header extraction with alternative method
+for sampling rate extraction (#26)
+- Speeding up readAxivity function by approximately 75 percent.
+
+
+# Changes in version 0.2.6 (release date:05-12-2022)
+
+- New CRAN release, only minor improvements to syntax
+
+
+# Changes in version 0.2.5 (GitHub-only-release date:09-11-2022)
+
+- readWav now correctly identifies the header and first timestamp
+
+
+# Changes in version 0.2.4 (release date:09-10-2022)
+
+- Addressing POSIX errors in R-devel.
+- Speeding up readAxivity function by approximately 40 percent.
+- Adding readWav function for reading accelerometer data stored in
+wav(Audio) format. This function was formerly known as g.wavread in the
+GGIR package but has been migrated here to make the GGIR package lighter.
+
+
+# Changes in version 0.2.3 (release date:29-09-2022)
+
+- Changed POSIXlt to character conversion to be compatible with R-devel
+update svn revision r82904 (2022-09-24 19:32:52)
+- Tidying up namespace references
+- Added zzz function to auto-check onattach package version relative to CRAN
+
+
+# Changes in version 0.2.2 (release date:31-08-2022)
+
+- Now also extracting GENEActiv RecordingID, Handedness, DeviceLocation and DeviceModel from header
+- Removed skin_on_cran() calls in unit test
+- Improved description for resample function
+- Fixed errors resulting from how lux values are read (issue #12)
+
+
+# Changes in version 0.2.1 (release date:16-08-2022)
+
+- Addressing request from CRAN to revise AxivityNumUnpack
+
+
+# Changes in version 0.2.0 (release date:12-08-2022)
+
+- First release with functionality for reading Axivity .cwa, GENEActiv .bin, and Genea, .bin data.
+
+

R/zzz.R

@@ -1,13 +1,24 @@
 .onAttach <- function(...) {
   if (!interactive()) return()
-  pkgs <- utils::available.packages()
+  # stop interactive calling from `library(GGIRread)`
+  repos <- getOption("repos")
+  if ("@CRAN@" %in% repos) {
+    repos <- utils::getCRANmirrors()
+    # choose cloud/first if option triggers `contrib.url`
+    # to call `chooseCRANmirror`
+    repos <- repos$URL[1]
+    packageStartupMessage(
+      "No CRAN mirror set, so using ", repos,
+      " to check GGIRread package version")
+  }
+  pkgs <- available.packages(repos = repos)
   cran_version <- package_version(pkgs[which(pkgs[,1] == "GGIRread"),"Version"])
   local_version <- utils::packageVersion("GGIRread")
   behind_cran <- cran_version > local_version
   if (interactive()) {
     if (behind_cran) {
       msg <- paste0("A newer version of GGIRread is available with bug fixes and new features. [", local_version," --> ", cran_version, "]")
       packageStartupMessage(msg)
-    }   
+    }
   }
 }