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updated README
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Jeremiah Wala committed Jun 18, 2015
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Expand Up @@ -13,16 +13,16 @@ You can download and compile these three libraries in one step by installing Sno
reuse -q GCC-4.9
## install SnowTools (will come with htslib, bwalib, ahocorasick) (-k is for no certifate checking, might be needed)
curl -L -k https://github.com/jwalabroad/SnowTools/archive/v0.1.3.tar.gz | tar xz
cd SnowTools-0.1.3/src
curl -L -k https://github.com/jwalabroad/SnowTools/archive/v0.1.6.tar.gz | tar xz
cd SnowTools-0.1.6/src
./configure
make
cd ../../
## install variant-bam (RELEASE VERSION)
curl -L -k https://github.com/jwalabroad/VariantBam/archive/v1.0.0.tar.gz | tar xz
cd VariantBam-1.0.0/src
./configure --with-snowtools=../../SnowTools-0.1.3 --with-htslib=../../SnowTools-0.1.3/src/htslib
curl -L -k https://github.com/jwalabroad/VariantBam/archive/v1.0.2.tar.gz | tar xz
cd VariantBam-1.0.2/src
./configure --with-snowtools=../../SnowTools-0.1.6 --with-htslib=../../SnowTools-0.1.6/src/htslib
make
## add variant binary to path
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