Skip to content

Navigation Menu

Explore
By company size
By use case
By industry
View all solutions
Topics
- AI
- DevOps
- Security
- Software Development
- View all
Explore
- GitHub Sponsors
  Fund open source developers
- The ReadME Project
  GitHub community articles
Repositories
- Enterprise platform
  AI-powered developer platform
Available add-ons
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

waveygang / wfmash Public

Notifications You must be signed in to change notification settings
Fork 21
Star 181

Code
Issues 35
Pull requests 5
Actions
Projects
Security
Insights

Additional navigation options

Code
Issues
Pull requests
Actions
Projects
Security
Insights

scoring parameter updates for broader diversity and alignment mode optimizations#247

Merged

ekg merged 13 commits intomainwaveygang/wfmash:mainfrom easy-divergedwaveygang/wfmash:easy-divergedCopy head branch name to clipboard

Jun 12, 2024

+266-312

Conversation Commits13 (13)Checks Files changed

Commits

Commits on Jun 2, 2024

fix easy scoring parameters that work well across diverse alignment problems
ekg
committed
single faidx_t producer many consumer to save memory
ekg
committed
avoid deadlock on empty input file
ekg
committed
update atomic queue definition and documentation for better single-produce multi-consumer behavior
ekg
committed
correct documentation of queues
ekg
committed

Commits on Jun 3, 2024

disable low-identity filtering
ekg
committed
replace thread-specific faidx objects with one and improve queue behavior
ekg
committed
keep fewer sketches around in big wfligns
ekg
committed
confirm that we actually have a mashmap style input row
ekg
committed

Commits on Jun 4, 2024

zero-terminate the output of faidx_fetch_seq64
ekg
committed
use generic modern optimizations, avoid processor-specific stuff
ekg
committed
use free rather than delete to avoid IOT error
ekg
committed
avoid march=native
ekg
committed

Footer

© 2025 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Docs
Contact

You can’t perform that action at this time.