Code

Stampede3 build#248

Code

Merged

ekg merged 19 commits intomainwaveygang/wfmash:mainfrom stampede3-buildwaveygang/wfmash:stampede3-buildCopy head branch name to clipboardJun 16, 2024

+460-368

Commits

Commits on Jun 2, 2024

• fix easy scoring parameters that work well across diverse alignment problems

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  a04908b

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• single faidx_t producer many consumer to save memory

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  edcd281

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• avoid deadlock on empty input file

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  2b91145

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• update atomic queue definition and documentation for better single-produce multi-consumer behavior

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• correct documentation of queues

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Commits on Jun 3, 2024

• disable low-identity filtering

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• replace thread-specific faidx objects with one and improve queue behavior

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  a7aa342

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• keep fewer sketches around in big wfligns

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• confirm that we actually have a mashmap style input row

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Commits on Jun 4, 2024

• zero-terminate the output of faidx_fetch_seq64

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• use generic modern optimizations, avoid processor-specific stuff

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  fb4c6d0

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• use free rather than delete to avoid IOT error

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  081213c

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• avoid march=native

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• make building possible on TACC's stampede3 cluster

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  75a6631

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• trying to debug on TACC which means getting ASAN bulit in

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Commits on Jun 5, 2024

• rest on micromamba/anaconda

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• build with clang and drop jemalloc

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Commits on Jun 12, 2024

• use typically correct path for libdeflate

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  18e33b0

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• make the build configurable and document how

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  d55cfe7

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