Fix for gene search

weng-lab · Apr 26, 2024 · 6d9be70 · 6d9be70
1 parent 1d8f847
commit 6d9be70
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Showing 6 changed files with 5 additions and 5 deletions.
diff --git a/immuscreen/public/igSCREEN_red.png b/immuscreen/public/igSCREEN_red.png
diff --git a/immuscreen/public/igSCREEN_red_light.png b/immuscreen/public/igSCREEN_red_light.png
diff --git a/immuscreen/src/app/page.tsx b/immuscreen/src/app/page.tsx
@@ -26,7 +26,7 @@ const Home = () => {
       <Grid2 container spacing={6} sx={{ mr: "auto", ml: "auto", mt: "2rem" }}>
         <Grid2 xs={12}>
           <Image
-            src="/igSCREEN_light.png"
+            src="/igSCREEN_red_light.png"
             width={400}
             height={172}
             alt="igSCREEN logo"

diff --git a/immuscreen/src/common/components/HomeAppBar.tsx b/immuscreen/src/common/components/HomeAppBar.tsx
@@ -93,7 +93,7 @@ const HomeAppBar = () => {
               }}
             >
               <Image
-                src="/igSCREEN_dark.png"
+                src="/igSCREEN_red.png"
                 width={100}
                 height={50}
                 alt="igSCREEN logo"
@@ -155,7 +155,7 @@ const HomeAppBar = () => {
               }}
             >
               <Image
-                src="/igSCREEN_dark.png"
+                src="/igSCREEN_red.png"
                 width={116}
                 height={50}
                 alt="igSCREEN logo"

diff --git a/immuscreen/src/common/gbview/chrombpnetatactracks.tsx b/immuscreen/src/common/gbview/chrombpnetatactracks.tsx
@@ -78,7 +78,7 @@ const ChromBPNetAtacTracks: React.FC<ChromBPNetBulkAtacTrackProps> = ({
 
   const defaultTracks: [string, string][] = []
 
-  for (let cell of defaultcelltypes) {
+  if (defaultcelltypes) for (let cell of defaultcelltypes) {
     //Currently this is slightly broken in that it includes all monocyte experiments when "Mono" is cell since Mono is substring of all Monocyte S and U experiments, need to fix
     const experiments = Object.entries(experimentInfo).filter(([experiment, info]) => experiment.includes(cell))
     experiments.forEach(exp => {

diff --git a/immuscreen/src/common/gbview/defaulttracks.tsx b/immuscreen/src/common/gbview/defaulttracks.tsx
@@ -96,7 +96,7 @@ export const TitledTrack: React.FC<{
 const DefaultTracks: React.FC<DefaultTracksProps> = (props) => {
   const [cTracks, setTracks] = useState<[string, string][]>(
     [
-      ["All iCREs", "https://downloads.wenglab.org/Calderon-Corces_activeCREs_iSCREEN.bigBed"],
+      ["All iCREs", "https://downloads.wenglab.org/Calderon-Corces_activeCREs_iSCREEN_withcolors.bigBed"],
     ]
   )
   const height = useMemo(() => cTracks.length * 80, [cTracks])