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adds glycolysis step
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khanspers committed Nov 22, 2024
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106 changes: 106 additions & 0 deletions stages/sig-glycolysis/index.html
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<!DOCTYPE html>
<html>
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<title>WikiPathways Academy</title>
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<div class="inner">
<h1>WikiPathways Academy</h1>
<h2>Organized training challenges for new WikiPathways authors</h2>
<a href="../../path.html" class="button"><small>Return to</small>Overview</a>
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<div id="content-wrapper">
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<section id="main-content">
<h1>
<a id="intro" class="anchor" href="#intro" aria-hidden="true">
<span aria-hidden="true" class="octicon octicon-link">
Signaling Pathway - Glycolysis
</span>
</a>
</h1>

<h2>Background</h2>
<p></p>
<h2>Your Mission</h2>
<p>Draw the part of the pathway outlined in red below:</p>
<img src="40001_2024_1708_Fig2_HTML-glycolysis.jpg" width="500px">
<ul>
<!--<li>Download the starter pathway here: <a href="https://academy.wikipathways.org/data/fig-met-1-fourth-start.gpml">fig-met-1-fourth-start.gpml</a>.</li>
<li>Launch PathVisio and open the dowloaded file or your draft pathway file via <b>File > Open</b>.</li>-->
<li>Add a metabolite node for "Glucose-6-phosphate".</li>
<li>Connect the glucose node to Glucose-6-phosphate with a <b>mim-conversion</b> interaction.</li>
<li>Add an anchor to the interaction and connect the enzyme (GCK) and inhiibitor (GCKR) with <b>mim-catalysis</b> and <b>mim-inhibition</b> interactions, respectively.</li>
<li>Connect Glucose-6-phosphate with Pyruvate using a <b>mim-conversion</b> interaction.</li>
<li>Update the text label for the node with ChEBI ID 57288 (Actyl-CoA) node to "Acetyl-CoA". Repeat for the node with ChEBI ID 57384 (Malonyl-CoA), updating the label to "Malonyl-CoA".</li>
<li>Connect Pyruvate with Acetyl-CoA using a <b>mim-conversion</b> interaction.</li>
<li>Update the text label for the node with ChEBI ID 26607 (SFA) node to "SFA". Repeat for the node with ChEBI ID 25413 (MUFA), updating the label to "MUFA".</li>
<li>Group the ACACA and ACACB nodes.</li>
<li>Complete the remaining steps in the smae way, adding <b>mim-conversion</b> interactions and enzymes.</li>
<li>Save your work as a GPML file under <b>File > Save As</b>.</li>
<li>Drag-and-drop the GPML file below to check if it is correct.</li>
</ul>


<div id="upload-target-container"></div>

<br>

<div id="next-button">
<a href="../sig-final/index.html" class="btn btn-info btn-lg pull-right">Next step</a>
</div>

<!--<p><a href="fig-met-1-fourth-solution.gpml">Click to download solution file (For Testing Only)</a>
</p>-->
<br /> <br /> <br />
</section>
</div>
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<script type="text/javascript">
window.wpAcademy.validateGPML({
uploadTargetContainerSelector: '#upload-target-container',
validate: 'sig-glycolysis-solution.gpml',
action: 'sig-glycolysis',
points: 5
});
</script>
<script>
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ga('create', 'UA-1605246-2', 'auto');
ga('send', 'pageview');

</script> </body>
</html>
2 changes: 1 addition & 1 deletion stages/sig-transcription/index.html
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Expand Up @@ -70,7 +70,7 @@ <h2>Your Mission</h2>

<div id="upload-target-container"></div>
<div id="next-button">
<a href="" class="btn btn-info btn-lg pull-right">Next step</a></div>
<a href="../sig-glycolysis/" class="btn btn-info btn-lg pull-right">Next step</a></div>
<br>
<br>
<!--<p><a href="draw-transcriptiontranslation-solution.gpml">Click to download solution file (For Testing Only)</a>
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