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added starter pathway
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khanspers committed May 9, 2024
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40 changes: 40 additions & 0 deletions data/draw-cofactor-reaction-start.gpml
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<?xml version="1.0" encoding="UTF-8"?>
<Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="draw-cofactor-reaction-start" Organism="Homo sapiens">
<Graphics BoardWidth="318.94752955639717" BoardHeight="327.4925970388157" />
<DataNode TextLabel="D-threo-Isocitrate" GraphId="b96da" Type="Metabolite">
<Comment>The ChEBI ID with the correct charge is: 15562</Comment>
<Attribute Key="org.pathvisio.model.BackpageHead" Value="Isocitrate" />
<Graphics CenterX="182.66528053227594" CenterY="105.1870748299321" Width="88.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="4646dc" />
<Xref Database="HMDB" ID="HMDB0000193" />
</DataNode>
<DataNode TextLabel="2-oxoglutarate" GraphId="da75d" Type="Metabolite">
<Graphics CenterX="182.66528053227594" CenterY="287.4925970388157" Width="84.9238578680197" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="4646dc" />
<Xref Database="HMDB" ID="HMDB0000208" />
</DataNode>
<Interaction GraphId="id17b35470">
<Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0">
<Point X="182.66528053227594" Y="115.1870748299321" GraphRef="b96da" RelX="0.0" RelY="1.0" />
<Point X="182.66528053227594" Y="277.4925970388157" GraphRef="da75d" RelX="0.0" RelY="-1.0" ArrowHead="mim-conversion" />
</Graphics>
<Xref Database="" ID="" />
</Interaction>
<InfoBox CenterX="4.5" CenterY="5.333333333333333" />
<Biopax>
<bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
<bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">citrate cycle pathway</bp:TERM>
<bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0000026</bp:ID>
<bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
</bp:openControlledVocabulary>
<bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
<bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">classic metabolic pathway</bp:TERM>
<bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0000002</bp:ID>
<bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
</bp:openControlledVocabulary>
<bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
<bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TCA cycle</bp:TERM>
<bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0000026</bp:ID>
<bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
</bp:openControlledVocabulary>
</Biopax>
</Pathway>

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