3. Publish latest release to Zenodo #11
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| name: 3. Publish latest release to Zenodo | |
| on: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: "30 06 15 * *" | |
| jobs: | |
| publish-zenodo: | |
| runs-on: ubuntu-latest | |
| env: | |
| ZENODO_TOKEN: ${{ secrets.ZENODO_TOKEN }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| path: wikipathways-data-release | |
| fetch-depth: 0 | |
| ref: main | |
| - name: Checkout pyzenodo4wpdata | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: wikipathways/pyzenodo4wpdata | |
| path: pyzenodo4wpdata | |
| fetch-depth: 0 | |
| ref: main | |
| - name: Publish to Zenodo | |
| run: | | |
| # Find latest 8-digit release number from dir names under wikipathways-data-release | |
| RELEASE=$(ls -d wikipathways-data-release/* | grep -o '[0-9]\{8\}' | sort -n | tail -1) | |
| echo "RELEASE set to $RELEASE" | |
| # Copy files from pyzenodo4wpdata | |
| cp pyzenodo4wpdata/pyzenodo4wpdata.py . | |
| cp pyzenodo4wpdata/meta-template.json . | |
| # Publish GMT to Zenodo | |
| for f in wikipathways-data-release/$RELEASE/gmt/*.gmt; do | |
| if [ -f "$f" ]; then | |
| echo "$f" | |
| python pyzenodo4wpdata.py ${ZENODO_TOKEN} meta-template.json $RELEASE $f | |
| fi | |
| done | |
| # Publish GPML to Zenodo | |
| for f in wikipathways-data-release/$RELEASE/gpml/*.zip; do | |
| if [ -f "$f" ]; then | |
| echo "$f" | |
| python pyzenodo4wpdata.py ${ZENODO_TOKEN} meta-template.json $RELEASE $f | |
| fi | |
| done |