Merge pull request #209 from wtsi-npg/dependabot/github_actions/actio… #123

	name: testing_and_building_repo
	on: [push, pull_request, workflow_dispatch]
	jobs:
	build:
	strategy:
	matrix:
	os: [ubuntu-latest]

	runs-on: ${{matrix.os}}
	name: Workflow on ${{ matrix.os }}
	steps:
	- uses: actions/checkout@v4
	with:
	fetch-depth: '0'

	- name: install libgd-dev and liblzma-dev
	run: \|
	# https://github.com/actions/runner-images/issues/2139
	sudo apt-get update
	sudo apt-get remove -y nginx libgd3
	sudo apt-get install -y libgd-dev liblzma-dev libcurl4-openssl-dev

	- name: clone samtools branch
	run: \|
	export HTSLIB=${{ github.workspace }}/htslib
	git clone --branch $HTSLIB_BRANCH https://github.com/samtools/htslib.git $HTSLIB
	env:
	HTSLIB_BRANCH: develop

	- name: make HTSLIB
	run: \|
	export HTSLIB=${{ github.workspace }}/htslib
	export HTSDIR=${{ github.workspace }}/htslib/b
	cd $HTSLIB
	git submodule update --init --recursive
	(autoreconf -i && mkdir b && ./configure --prefix=$HTSDIR && make && make install)

	- name: make and configure
	run: \|
	export HTSDIR=${{ github.workspace }}/htslib/b
	autoreconf -i
	./configure --with-htslib=$HTSDIR
	make
	make check
	#make distcheck #TODO

	# running ./Build dist and exporting files
	- name: run ./Build dist
	run: \|
	make dist
	export DIST_FILE=$(ls bambi-*.tar.gz)
	export SHA256_FILE=$DIST_FILE.sha256
	shasum -a 256 $DIST_FILE > $SHA256_FILE

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