update apt cache before changing deps (#202) #9

	name: "Lint and test-build Dockerfile"

	on:
	push:
	branches:
	- '**'

	jobs:
	lint-docker:
	runs-on: ubuntu-latest

	continue-on-error: true

	defaults:
	run:
	shell: "bash -l -e -o pipefail {0}"

	steps:
	- name: "Checkout code"
	uses: actions/checkout@v3
	with:
	fetch-depth: 0

	- name: "Lint Dockerfile"
	run: \|
	cat <<EOT >> .hadolint.yaml
	ignored:
	- DL3008
	EOT
	docker run --rm -i -v /"${PWD}"/.hadolint.yaml:/.config/hadolint.yaml ghcr.io/hadolint/hadolint < docker/Dockerfile

	build-docker:
	runs-on: ubuntu-latest

	defaults:
	run:
	shell: "bash -l -e -o pipefail {0}"

	steps:
	- name: "Checkout code"
	uses: actions/checkout@v3
	with:
	fetch-depth: 0

	- name: "Docker build"
	run: \|
	set -x
	docker build --rm \
	--file docker/Dockerfile \
	--build-arg HTSLIB_BRANCH=1.18 \
	--tag bambi .
	docker run bambi bambi --version

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