Merge pull request #346 from wtsi-npg/devel

Pull from devel to master to create release 4.5.0

CHANGELOG.md

@@ -18,6 +18,22 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Changed
 
+## [4.5.0]
+
+### Added
+
+#### Recipes
+ - wr 0.32.0
+ - baton 4.0.0
+
+#### Features
+
+### Removed
+
+#### Recipes
+
+### Changed
+
 #### Recipes 
 
 ## [4.4.0]

recipes/baton/4.0.0/build.sh

@@ -0,0 +1,13 @@
+#!/bin/sh
+
+set -ex
+
+n="$CPU_COUNT"
+
+LD_LIBRARY_PATH=$PREFIX/lib ./configure --prefix="$PREFIX" \
+            CFLAGS="-I$PREFIX/include -I$PREFIX/include/irods" \
+            CPPFLAGS="-I$PREFIX/include -I$PREFIX/include/irods" \
+            LDFLAGS="-L$PREFIX/lib"
+
+make -j $n
+make install prefix="$PREFIX"

recipes/baton/4.0.0/conda_build_config.yaml

@@ -0,0 +1,5 @@
+
+irods:
+  - 4.2.7
+  - 4.2.10
+  - 4.2.11

recipes/baton/4.0.0/meta.yaml

@@ -0,0 +1,98 @@
+{% set version = "4.0.0" %}
+{% set sha256 = "d1ecb00b784b442c7f9ccafab27c01f745bbe88d18c024aedea1237f345b5424" %}
+
+package:
+  name: baton-pkg
+  version: "{{ version }}"
+
+about:
+  home: https://github.com/wtsi-npg/baton
+  license: GPL2
+  summary: "Client programs and API for use with iRODS (Integrated Rule-Oriented Data System)."
+
+build:
+  number: 0
+
+source:
+  url: https://github.com/wtsi-npg/baton/releases/download/{{ version }}/baton-{{ version }}.tar.gz
+  fn: baton-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+requirements:
+  build:
+    - {{ compiler("c") }}
+    - autoconf
+    - automake
+    - libtool
+    - make
+    - perl
+    - pkg-config
+  host:
+    - irods-dev {{ irods }}
+    - libjansson-dev
+    - libssl-dev
+
+outputs:
+  - name: baton
+    version: {{ version }}
+    requirements:
+      build:
+        - {{ compiler("c") }}
+        - autoconf
+        - automake
+        - libtool
+        - make
+        - perl
+        - pkg-config
+      host:
+        - irods-dev {{ irods }}
+        - libjansson-dev
+        - libssl-dev
+      run:
+        - {{ pin_subpackage("libbaton", exact=True) }}
+        - irods-runtime {{ irods }}
+        - libjansson
+        - libssl
+    files:
+      - bin/baton-*
+    test:
+      commands:
+        - baton-list --version
+
+  - name: libbaton
+    version: {{ version }}
+    requirements:
+      build:
+        - {{ compiler("c") }}
+        - autoconf
+        - automake
+        - libtool
+        - make
+        - perl
+        - pkg-config
+      host:
+        - irods-dev {{ irods }}
+        - libjansson-dev
+        - libssl-dev
+      run:
+        - irods-runtime {{ irods }}
+        - libjansson
+        - libssl
+    files:
+      - lib/libbaton.*
+    test:
+      commands:
+        - test -h ${PREFIX}/lib/libbaton.so
+
+  - name: libbaton-dev
+    version: {{ version }}
+    requirements:
+      run:
+        - {{ pin_subpackage("libbaton", exact=True) }}
+        - irods-dev {{ irods }}
+    files:
+      - include/baton
+      - lib/pkgconfig/baton.pc
+    test:
+      commands:
+        - test -f ${PREFIX}/include/baton/baton.h

recipes/wr/0.32.0/build.sh

@@ -0,0 +1,9 @@
+#!/bin/sh
+
+set -e
+
+mkdir -p "$PREFIX/bin"
+cp wr "$PREFIX/bin/"
+
+mkdir -p "$PREFIX/share/doc/wr"
+cp README.md "$PREFIX/share/doc/wr/"

recipes/wr/0.32.0/meta.yaml

@@ -0,0 +1,24 @@
+{% set version = "0.32.0" %}
+{% set sha256 = "23ef9950cf3bce8395b599ac6b7f35d7032bff3f1a6707fb46b5f5149a3a8ed9" %}
+
+package:
+  name: wr
+  version: "{{ version }}"
+
+about:
+  home: https://github.com/VertebrateResequencing/wr
+  license: GPL3
+  summary: "High performance Workflow Runner."
+
+build:
+  number: 0
+  binary_relocation: false
+
+source:
+  url: https://github.com/VertebrateResequencing/wr/releases/download/v{{ version }}/wr-linux-x86-64.zip
+  fn: wr-{{ version }}.zip
+  sha256: {{ sha256 }}
+
+test:
+  commands:
+    - wr -h