Merge branch 'devel' for release 4.9.0

CHANGELOG.md

@@ -18,6 +18,13 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Changed
 
+## [4.9.0]
+
+### Added
+
+#### Recipes
+ - bambi 0.15.0
+
 ## [4.8.0]
 
 ### Added

recipes/bambi/0.15.0/build.sh

@@ -0,0 +1,13 @@
+#!/bin/sh
+
+set -ex
+
+autoreconf -fi
+
+n="$CPU_COUNT"
+
+CPPFLAGS="-I$PREFIX/include" LDFLAGS="-Wl,-rpath,$PREFIX/lib -L$PREFIX/lib" \
+        ./configure --prefix="$PREFIX" --with-htslib="$PREFIX"
+
+make -j $n CPPFLAGS="-I$PREFIX/include" LDFLAGS="-L$PREFIX/lib"
+make install prefix="$PREFIX"

recipes/bambi/0.15.0/meta.yaml

@@ -0,0 +1,65 @@
+{% set version = "0.15.0" %}
+{% set htslib_version = "1.16" %}
+
+package:
+  name: bambi-pkg
+  version: "{{ version }}"
+
+about:
+  home: https://github.com/wtsi-npg/bambi
+  license: AGPL
+  summary: "A set of programs to manipulate SAM/BAM/CRAM files, using HTSLIB."
+
+build:
+  number: 0
+
+source:
+  git_url: https://github.com/wtsi-npg/bambi.git
+  git_rev: {{ version }}
+
+requirements:
+  build:
+    - {{ compiler("c") }}
+    - autoconf
+    - automake
+    - make
+    - perl
+    - pkg-config
+  host:
+    - libgd-dev
+    - libhts-dev =={{ htslib_version }}
+    - libxml2-dev
+    - libz-dev
+  run:
+    - libgd
+    - libhts =={{ htslib_version }}
+    - libxml2
+    - libz
+
+outputs:
+  - name: bambi
+    requirements:
+      build:
+        - {{ compiler("c") }}
+        - autoconf
+        - automake
+        - make
+        - perl
+        - pkg-config
+      host:
+        - libgd-dev
+        - libhts-dev =={{ htslib_version }}
+        - libxml2-dev
+        - libz-dev
+      run:
+        - libgd
+        - libhts =={{ htslib_version }}
+        - libxml2
+        - libz
+    files:
+      - bin/bambi
+      - bin/check_bcl
+
+test:
+  commands:
+    - bambi --version