Added a new endpoint

lang_qc/endpoints/pacbio_well.py

@@ -37,7 +37,7 @@
 from lang_qc.db.mlwh_connection import get_mlwh_db
 from lang_qc.db.qc_connection import get_qc_db
 from lang_qc.db.qc_schema import User
-from lang_qc.models.pacbio.well import PacBioPagedWells, PacBioWellFull
+from lang_qc.models.pacbio.well import PacBioPagedWells, PacBioWellFull, PacBioWellLibraries
 from lang_qc.models.qc_flow_status import QcFlowStatusEnum
 from lang_qc.models.qc_state import QcState, QcStateBasic
 from lang_qc.util.auth import check_user
@@ -185,6 +185,25 @@ def get_seq_metrics(
     return PacBioWellFull(db_well=mlwh_well, qc_state=qc_state)
 
 
+@router.get(
+    "/products/{id_product}/seq_level/libs",
+    summary="Get full sequencing QC metrics and state for a product",
+    responses={
+        status.HTTP_404_NOT_FOUND: {"description": "Well product does not exist"},
+        status.HTTP_422_UNPROCESSABLE_ENTITY: {"description": "Invalid product ID"},
+    },
+    response_model=PacBioWellFull,
+)
+def get_well_lims_info(
+    id_product: ChecksumSHA256,
+    mlwhdb_session: Session = Depends(get_mlwh_db),
+) -> PacBioWellLibraries:
+
+    mlwh_well = _find_well_product_or_error(id_product, mlwhdb_session)
+    return PacBioWellLibraries(db_well=mlwh_well)
+
+
+
 @router.post(
     "/products/{id_product}/qc_claim",
     summary="Claim the well to start QC",

lang_qc/models/pacbio/well.py

@@ -27,7 +27,7 @@
 from pydantic.dataclasses import dataclass
 
 from lang_qc.db.mlwh_schema import PacBioRunWellMetrics
-from lang_qc.models.pacbio.experiment import PacBioExperiment
+from lang_qc.models.pacbio.experiment import PacBioExperiment, PacBioLibrary
 from lang_qc.models.pacbio.qc_data import QCDataWell
 from lang_qc.models.pager import PagedResponse
 from lang_qc.models.qc_state import QcState
@@ -226,3 +226,22 @@ def pre_root(cls, values: dict[str, Any]) -> dict[str, Any]:
             assigned["experiment_tracking"] = PacBioExperiment.from_orm(experiment_info)
 
         return assigned
+
+@dataclass(kw_only=True, frozen=True)
+class PacBioWellLibraries(PacBioWell):
+    """A full response model for a single PacBio well."""
+
+    libraries: list[PacBioLibrary] = Field(
+        title="Experiment tracking information",
+    )
+
+    @model_validator(mode="before")
+    def pre_root(cls, values: dict[str, Any]) -> dict[str, Any]:
+
+        assigned = super().pre_root(values)
+        mlwh_db_row: PacBioRunWellMetrics = values.kwargs["db_well"]
+        assigned["libraries"] = [
+            PacBioLibrary(db_library=row) for row in mlwh_db_row.get_experiment_info()
+        ]
+
+        return assigned