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Qc check rnaseqc#392

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dkj merged 45 commits intowtsi-npg:develwtsi-npg/npg_qc:develfrom rbbits:qc_check_rnaseqcrbbits/npg_qc:qc_check_rnaseqcCopy head branch name to clipboardMay 25, 2017

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Commits on Aug 10, 2015

• add Eclipse's .project file to .gitignore

  

  Ruben E. Bautista

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Commits on Sep 1, 2015

• Merge branch 'master' into devel

  

  Ruben E. Bautista

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Commits on Sep 24, 2015

• Merge branch 'devel' of github.com:wtsi-npg/npg_qc

  

  Ruben E. Bautista

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Commits on Oct 22, 2015

• Merge branch 'master' of github.com:wtsi-npg/npg_qc

  

  Ruben E. Bautista

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• Merge branch 'devel' of github.com:wtsi-npg/npg_qc

  

  Ruben E. Bautista

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Commits on Nov 17, 2015

• Merge branch 'devel' of github.com:wtsi-npg/npg_qc into devel

  

  Ruben E. Bautista

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Commits on Nov 24, 2015

• Merge branch 'devel' of github.com:wtsi-npg/npg_qc into devel

  

  Ruben E. Bautista

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Commits on Jan 29, 2016

• Merge branch 'devel' of github.com:wtsi-npg/npg_qc into devel

  

  Ruben E. Bautista

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Commits on May 9, 2016

• Merge branch 'devel' of github.com:wtsi-npg/npg_qc into devel

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  Ruben E. Bautista

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Commits on May 19, 2016

• Merge branch 'devel' of github.com:wtsi-npg/npg_qc into devel

  

  Ruben E. Bautista

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Commits on Aug 23, 2016

• Merge branch 'devel' of github.com:wtsi-npg/npg_qc into devel

  

  Ruben E. Bautista

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Commits on Oct 6, 2016

• Merge branch 'devel' of github.com:wtsi-npg/npg_qc into devel

  

  Ruben E. Bautista

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Commits on Oct 19, 2016

• Merge branch 'devel' of github.com:wtsi-npg/npg_qc into devel

  

  Ruben E. Bautista

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• Merge branch 'devel' of github.com:wtsi-npg/npg_qc into qc_check_rnaseqc

  

  Ruben E. Bautista

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Commits on Oct 25, 2016

• Initialise undef variables

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  Ruben E. Bautista

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• Use of npg_qc::autoqc::autoqc->checks_list is deprecated

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  Ruben E. Bautista

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Commits on Nov 2, 2016

• Simplify rna_seqc result object by grouping similar attributes using Readonly::Array

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  Ruben E. Bautista

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Commits on Nov 8, 2016

• Store RNA-SeQC check JSON in npq_qc database

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  Ruben E. Bautista

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• Add RNA-SeQC check template to npg_qc_viewer

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  Ruben E. Bautista

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• Merge remote-tracking branch 'upstream/devel' into qc_check_rnaseqc

  

  Ruben E. Bautista

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• Update npg_qc_viewer/Changes

  

  Ruben E. Bautista

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Commits on Nov 9, 2016

• Merge branch 'devel' of github.com:wtsi-npg/npg_qc into devel

  

  Ruben E. Bautista

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• Merge remote-tracking branch 'upstream/devel' into qc_check_rnaseqc

  

  Ruben E. Bautista

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Commits on Nov 15, 2016

• Change type of RNA-SeQC table columns and other bug fixes

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  Ruben E. Bautista

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Commits on Nov 22, 2016

• Display RNA-SeQC results in summary table and minor fixes

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  Ruben E. Bautista

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Commits on Nov 28, 2016

• Fixed link to RNA-SeQC report

  

  Ruben E. Bautista

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• Merge branch 'devel' of github.com:wtsi-npg/npg_qc into devel

  

  Ruben E. Bautista

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Commits on Nov 30, 2016

• Merge branch 'devel' of github.com:wtsi-npg/npg_qc into devel

  

  Ruben E. Bautista

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• Add composition attribute to rna_seqc schema; don't hide its template anymore

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  Ruben E. Bautista

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Commits on Dec 5, 2016

• Merge remote-tracking branch 'mgcam/rpt4composition' into qc_check_rnaseqc_with_mgcam_rpt4composition

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  Ruben E. Bautista

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• Template for rna_seqc exists now, render its metrics

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  Ruben E. Bautista

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Commits on Dec 6, 2016

• Show link to report only when db_lookup=0; single-line summary metrics

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  Ruben E. Bautista

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• Drop columns that aren't necessary from rna_seqc

  

  Ruben E. Bautista

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Commits on Dec 8, 2016

• Updated Changes; Minor HTML fixes

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  Ruben E. Bautista

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• Merge branch 'devel' of github.com:wtsi-npg/npg_qc into devel

  

  Ruben E. Bautista

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• Merge branch 'devel' into qc_check_rnaseqc

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• Keep Perl Critic happy-changes

  

  Ruben E. Bautista

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Commits on Dec 12, 2016

• Remove column path from table rna_seqc; remove Maybe[] from data types where appropriate

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  Ruben E. Bautista

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• Update MANIFEST

  

  Ruben E. Bautista

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Commits on Jan 5, 2017

• Create RNA-SeQC output directory by default; improved tests

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  Ruben E. Bautista

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Commits on Jan 6, 2017

• Fix Critic criticisms

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  Ruben E. Bautista

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Commits on Jan 18, 2017

• Change the path for the RNA-SeQC report accessible from the template in npg_qc_viewer

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  Ruben E. Bautista

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• Add tests for autoqc::Schema::Result::RnaSeqc

  

  Ruben E. Bautista

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Commits on Jan 19, 2017

• Add unique constraint to RnaSeqc DBix schema

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  Ruben E. Bautista

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Commits on Jan 20, 2017

• Update SQL scripts, Changes and tidy up code

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  Ruben E. Bautista

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