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Fixed typos and deleted superfluous commas
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mgcam committed Oct 31, 2023
1 parent ad5bbf0 commit 1035236
Showing 1 changed file with 4 additions and 4 deletions.
8 changes: 4 additions & 4 deletions Changes
Original file line number Diff line number Diff line change
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LIST OF CHANGES

- Removed the use of 'xml' lims driver from all tests.
- Deleted 'xml' lims driver class and all classes, which supported this
- Deleted 'xml' lims driver class and all classes which supported this
functionality, together with all related tests and test data.
- In release 97.0.0, ihe default LIMS driver type in samplesheet generation
- In release 97.0.0, the default LIMS driver type in samplesheet generation
was changed to 'ml_warehouse'. Following this change, the code for
auto-generation of MiSeq default samplesheets is now simplified to exclude
an explicit creation of LIMS objects.
- Changes to st::api::lims, which are not related to the 'xml' lims driver
removal:
- deleted all previously deprecated methods ('seq_qc_state',
'associated_lims', 'associated_child_lims', 'associated_child_lims_ia');
- deleted methods, for which we do not have data in ml warehouse, our
- deleted methods for which we do not have data in ml warehouse, our
primary source of LIMS data ('request_id', 'project_id', 'project_name');
- deleted all code for computing inline tag indexes and inferring
tag sequences and library types from sample description since
definitions like this have not been in use for the last six years;
- reimplemented the 'reference_genome' method to exclude a fallback to
a study reference for tag zero and lane-level objects when samples
have different references.
- Restricted the 'all_lanes_mergeable' flag in the 'lonf_info' role to
- Restricted the 'all_lanes_mergeable' flag in the 'long_info' role to
NovaSeq Standard workflow, ie dropped an additional case of HiSeq Rapid Run
since HiSeq instruments are no longer used.
- Updated DBIx classes from the prod database. Changes are due to the MySQL
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