Added a script to generate samplesheets for pending NovaSeqX runs

MANIFEST

@@ -3,6 +3,8 @@ bin/illumina_instruments_uptime
 bin/npg_daemon_control
 bin/npg_move_runfolder
 bin/npg_samplesheet4MiSeq
+bin/npg_samplesheet4NovaSeqX
+bin/npg_samplesheet_generator_NovaSeqXSeries
 bin/npg_status_save
 bin/staging_area_monitor
 bin/npg_deletable_dr_runs

bin/npg_samplesheet4NovaSeqX

@@ -0,0 +1,98 @@
+#!/usr/bin/env perl
+
+use strict;
+use warnings;
+use FindBin qw($Bin);
+use lib ( -d "$Bin/../lib/perl5" ? "$Bin/../lib/perl5" : "$Bin/../lib" );
+use Log::Log4perl qw(:easy);
+
+use npg::samplesheet::auto;
+
+our $VERSION = '0';
+
+Log::Log4perl->easy_init($INFO);
+
+my $log = Log::Log4perl->get_logger('main');
+$log->info('Starting npg samplesheet daemon for NovaSeqX instruments');
+
+npg::samplesheet::auto->new(instrument_format => 'NovaSeqX')->loop();
+
+0;
+
+__END__
+
+=head1 NAME
+
+npg_samplesheet4NovaSeqX
+
+=head1 USAGE
+
+  npg_samplesheet4NovaSeqX
+
+=head1 DESCRIPTION
+
+The script, once started, runs in perpetuity, generating Illumina-style
+samplesheets for any NovaSeqX run with status 'run pending'.
+
+=head1 REQUIRED ARGUMENTS
+
+None
+
+=head1 OPTIONS
+
+=head1 DIAGNOSTICS
+
+=head1 CONFIGURATION
+
+Access to both npg_tracking and ml warehouse database is required.
+
+=head1 DEPENDENCIES
+
+=over
+
+=item strict
+
+=item warnings
+
+=item FindBin
+
+=item lib
+
+=item Log::Log4perl
+
+=item npg::samplesheet::auto
+
+=back
+
+=head1 EXIT STATUS
+
+  Does not exit unless is sent a signal to terminate.
+
+=head1 INCOMPATIBILITIES
+
+=head1 BUGS AND LIMITATIONS
+
+=head1 AUTHOR
+
+Marina Gourtovaia E<lt>[email protected]<gt>
+
+=head1 LICENSE AND COPYRIGHT
+
+Copyright (C) 2023 GRL.
+
+This file is part of NPG.
+
+NPG is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+=cut

bin/npg_samplesheet_generator_NovaSeqXSeries

@@ -59,8 +59,8 @@ npg_samplesheet_generator_NovaSeqXSeries
 
 =head1 DESCRIPTION
 
-Generates a samplesheet for the NovaSeq Series X Illumina instrument and
-DRAGEN analysis.
+Generates a single samplesheet for the NovaSeq Series X Illumina instrument
+and DRAGEN analysis.
 
 =head1 EXIT STATUS