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Added records for undocumented changed. #780

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Nov 27, 2023
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Added records for undocumented changed. #780

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19 changes: 15 additions & 4 deletions Changes
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Original file line number Diff line number Diff line change
Expand Up @@ -18,17 +18,28 @@ LIST OF CHANGES
definitions like this have not been in use for the last six years;
- reimplemented the 'reference_genome' method to exclude a fallback to
a study reference for tag zero and lane-level objects when samples
have different references.
- Restricted the 'all_lanes_mergeable' flag in the 'long_info' role to
NovaSeq Standard workflow, ie dropped an additional case of HiSeq Rapid Run
since HiSeq instruments are no longer used.
have different references;
- ensured 'required_insert_size' method works correctly for objects that
are initialised with the 'rpt_list' attribute, ie have the 'position'
attribute undefined;
- added 'aggregate_libraries' method, which is similar to the existing
'aggregate_xlanes' method, but instead of getting an instruction to
merge libraries, discovers the libraries which can be merged and returns
a list of merged entities and, separately, a list of singletons.
- npg_tracking::illumina::run::long_info role:
- restricted the 'all_lanes_mergeable' flag to NovaSeq Standard workflow,
ie dropped an additional case of HiSeq Rapid Run since HiSeq instruments
are no longer in use;
- ensured the detection of NovaSeqX and NovaSeq instrument types is
unambiguous.
- Updated DBIx classes from the prod database. Changes are due to the MySQL
database server upgrade to v8.+
- Finding the runfolder path - stopped errors being raised when a runfolder
is found in 'analysis' or 'outgoing' in the presence of a duplicate runfolder
in 'incoming' (the duplicates in 'incoming' are sometimes created by
instruments well after the run was mirrored and the runfolder moved to
'analysis'). The duplicate runfolder in 'incoming' is disregarded'.
- DRAGEN samplesheet generation - limit analysis to human samples only.

release 97.0.2
- pin DBD::mysql to 4.050 to keep temp support for old mysql clients
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