Merge pull request #307 from ces/pacbio3

Add fastq and gff as a standard ancillary file type
wtsi-npg · Jun 7, 2024 · 43f219f · 43f219f
2 parents a1962a1 + 0fa5a0b
commit 43f219f
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diff --git a/Changes b/Changes
@@ -1,6 +1,7 @@
 
  - Add PACBIO_ISOSEQ_PRIMERS to Metadata - required for archiving
    analysis output from IsoSeq analysis jobs
+ - Add fastq and gff as a standard ancillary file type
 
 Release 3.22.2 (2024-05-24)
 

diff --git a/lib/WTSI/NPG/iRODS/Annotator.pm b/lib/WTSI/NPG/iRODS/Annotator.pm
@@ -72,7 +72,7 @@ sub hts_data_suffixes {
 =cut
 
 sub hts_ancillary_suffixes {
-  return (qw[bam_stats bcfstats bamcheck bed bqsr_table fasta flagstat hops json quant 
+  return (qw[bam_stats bcfstats bamcheck bed bqsr_table fasta fastq flagstat gff hops json quant 
              seqchksum stats tab txt xml _SamHaplotag_Clear_BC _SamHaplotag_UnClear_BC _SamHaplotag_Missing_BC_QT_tags
             ]
          );