update track plot tutorial

xinhe-lab · Oct 6, 2023 · 58b786b · 58b786b
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Showing 6 changed files with 33 additions and 70 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -11,7 +11,7 @@ Description: Performs enrichment, functionally-informed genetic fine-mapping
     and gene mapping.
 BugReports: https://github.com/xinhe-lab/mapgen/issues
 License: MIT + file LICENSE
-Depends: R (>= 3.5.1)
+Depends: R (>= 3.5.0)
 Encoding: UTF-8
 Imports:
     tidyverse,

diff --git a/docs/articles/gene_mapping_tutorial_files/figure-html/gene-manhattan-plot-1.png b/docs/articles/gene_mapping_tutorial_files/figure-html/gene-manhattan-plot-1.png
diff --git a/docs/articles/track_plot_tutorial.html b/docs/articles/track_plot_tutorial.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -8,7 +8,7 @@ articles:
   gene_mapping_tutorial: gene_mapping_tutorial.html
   partition_pip_tutorial: partition_pip_tutorial.html
   track_plot_tutorial: track_plot_tutorial.html
-last_built: 2023-10-06T03:57Z
+last_built: 2023-10-06T04:47Z
 urls:
   reference: https://xinhe-lab.github.io/mapgen/reference
   article: https://xinhe-lab.github.io/mapgen/articles

diff --git a/docs/reference/track_plot.html b/docs/reference/track_plot.html
diff --git a/vignettes/track_plot_tutorial.Rmd b/vignettes/track_plot_tutorial.Rmd
@@ -22,7 +22,7 @@ Please have the following Bioconductor packages installed:
 Load packages
 ```{r load-packages, message=FALSE, warning=FALSE}
 library(GenomicFeatures) #  Making and manipulating annotations
-library(rtracklayer)
+library(rtracklayer) # Import annotation data
 library(Gviz) # R package used to visualize track plots
 library(GenomicInteractions) # visualize HiC loops
 library(AnnotationDbi) # match gene ID to gene symbol