Analyzed more data

ycanerol · Jun 15, 2017 · 3d8f01f · 3d8f01f
1 parent f2e91c7
commit 3d8f01f
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Showing 5 changed files with 12 additions and 15 deletions.
diff --git a/checkerflicker_analysis_dimos.py b/checkerflicker_analysis_dimos.py
@@ -22,9 +22,9 @@
     import lnp
 
 main_dir = '/Users/ycan/Documents/official/gottingen/lab rotations/\
-LR3 Gollisch/data/Experiments/Mouse/2017_01_17/'
+LR3 Gollisch/data/Experiments/Mouse/2016_10_21/'
 
-cells_classified = main_dir+'sorting_info.mat'
+cells_classified = main_dir+'clusters.mat'
 
 frames_path = 'frametimes/2_checkerflicker10x10bw2blinks_frametimings.mat'
 stimulus_type = frames_path.split('/')[-1].split('_')[0]

diff --git a/fff_analysis_dimos.py b/fff_analysis_dimos.py
@@ -23,9 +23,9 @@
     import lnp_checkerflicker as lnpc
 
 main_dir = '/Users/ycan/Documents/official/gottingen/lab rotations/\
-LR3 Gollisch/data/Experiments/Mouse/2017_01_17/'
+LR3 Gollisch/data/Experiments/Mouse/2016_10_21/'
 
-cells_classified = main_dir+'sorting_info.mat'
+cells_classified = main_dir+'clusters.mat'
 #%%
 stimulus_path = '/Users/ycan/Documents/official/gottingen/\
 lab rotations/LR3 Gollisch/data/fff2h.npy'

diff --git a/onoffplotter.py b/onoffplotter.py
@@ -10,7 +10,7 @@
 import matplotlib.pyplot as plt
 
 main_dir = '/Users/ycan/Documents/official/gottingen/lab rotations/\
-LR3 Gollisch/data/Experiments/Salamander/2014_01_21/analyzed/'
+LR3 Gollisch/data/Experiments/Salamander/2014_02_25/analyzed/'
 
 exp_name = main_dir.split('/')[-4]+'_'+main_dir.split('/')[-3]
 
@@ -81,6 +81,8 @@
 spikenr_c = spikenrc_c
 onoffindices_c = onoffindicesc_c
 
+outliers = np.where(np.abs(onoffindices_c - onoffindices_f) > .6)[0]
+
 # %%
 plt.figure(figsize=(8, 16), dpi=200)
 
@@ -106,8 +108,7 @@
 
 plt.tight_layout()
 plt.savefig('/Users/ycan/Documents/official/gottingen/lab rotations/\
-LR3 Gollisch/figures/{}'.format(exp_name)
-            , dpi=200)
+LR3 Gollisch/figures/{}'.format(exp_name), dpi=200)
 plt.show()
 
 for i in outliers:

diff --git a/onoffplotter_dimos.py b/onoffplotter_dimos.py
@@ -10,10 +10,8 @@
 import matplotlib.pyplot as plt
 
 main_dir = '/Users/ycan/Documents/official/gottingen/lab rotations/\
-LR3 Gollisch/data/Experiments/Mouse/2017_01_17/analyzed/'
+LR3 Gollisch/data/Experiments/Mouse/2016_10_21/analyzed/'
 
-#main_dir = '/Users/ycan/Documents/official/gottingen/lab rotations/\
-#LR3 Gollisch/data/Experiments/Salamander/2014_02_20/analyzed/'
 
 exp_name = main_dir.split('/')[-4]+'_'+main_dir.split('/')[-3]
 
@@ -111,8 +109,7 @@
 
 plt.tight_layout()
 plt.savefig('/Users/ycan/Documents/official/gottingen/lab rotations/\
-LR3 Gollisch/figures/Mouse_2017_01_17.png'
-            , dpi=200)
+LR3 Gollisch/figures/{}'.format(exp_name), dpi=200)
 plt.show()
 
 for i in outliers:

diff --git a/plotall_dimos.py b/plotall_dimos.py
@@ -17,7 +17,7 @@
 import matplotlib.pyplot as plt
 
 main_dir = '/Users/ycan/Documents/official/gottingen/lab rotations/\
-LR3 Gollisch/data/Experiments/Mouse/2017_01_17/analyzed/'
+LR3 Gollisch/data/Experiments/Mouse/2017_02_14/analyzed/'
 
 exp_name = main_dir.split('/')[-4]+' '+main_dir.split('/')[-3]
 
@@ -120,8 +120,7 @@
 
     plt.subplot(3, 3, 8)
     f_size = 5
-    plt.imshow(c['sta_unscaled'][c['max_i'][0]-f_size:c['max_i
-    '][0]+f_size+1,
+    plt.imshow(c['sta_unscaled'][c['max_i'][0]-f_size:c['max_i'][0]+f_size+1,
                                  c['max_i'][1]-f_size:c['max_i'][1]+f_size+1,
                                  int(c['max_i'][2])],
                cmap='Greys',