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Dr. Youri Hoogstrate, 2019 - 2023
Please cite this paper (10.1016/j.ccell.2023.02.019) when using recursiveCorPlot for your publications:
Youri Hoogstrate, Kaspar Draaisma, Santoesha A. Ghisai, Levi van Hijfte, Nastaran Barin, Iris de Heer,
Wouter Coppieters, Thierry P.P. van den Bosch, Anne Bolleboom, Zhenyu Gao, Arnaud J.P.E. Vincent,
Latifa Karim, Manon Deckers, Martin J.B. Taphoorn, Melissa Kerkhof, Astrid Weyerbrock, Marc Sanson,
Ann Hoeben, Slávka Lukacova, Giuseppe Lombardi, Sieger Leenstra, Monique Hanse,
Ruth E.M. Fleischeuer, Colin Watts, Nicos Angelopoulos, Thierry Gorlia, Vassilis Golfinopoulos,
Vincent Bours, Martin J. van den Bent, Pierre A. Robe, Pim J. French
Transcriptome analysis reveals tumor microenvironment changes in glioblastoma,
Cancer Cell, 2023, ISSN 1535-6108, https://doi.org/10.1016/j.ccell.2023.02.019
Directory structure:
# main R data analyses:
./scripts/load_*.R [loading of data]
- data is typically structured at 3 levels:
* per gene
* per patient
* per resection/sample
./scripts/analysis_*.R [analysis of data, typically exporting results to ./cache]
./scripts/vis_*.R [visualisation of data]
./if/*.ijm [ImageJ IF analysis scripts]
LICENSE [copy of MIT license]