Biodiversity Analysis

Biodiversity Data Analysis and Visualization

A Project by Institute of Information Science, Academia Sinica

Features

• Spatial distribution graph
• Spatial correlation quotient
• Temporal distribution graph
• Temporal correlation quotient
• Co-occurrence correlation quotient

Supported file format: Darwin Core Archive (DwC-A).

Screenshots

Sample biodiversity data used in the above demonstration:
Shao, Kwang-Tsao, et al. (2012) A dataset from bottom trawl survey around Taiwan. ZooKeys 198: 103-109.
(doi: 10.3897/zookeys.198.3032)

Getting Started

Download the repository and execute the following command:

source install.sh

From now on, you can start this program by running:

source ba-env/bin/activate && ./src/app.py &

Requirements

Make sure you have installed all dependencies:

sudo apt-get install python3.5 python3.5-venv python3-numpy python3-scipy python3-matplotlib

This program has been tested on Ubuntu 15.10 and above,
but it should work on other platforms with few modifications.

Documentation

Full documents are available at:
https://rawgit.com/yuwen41200/biodiversity-analysis/master/docs/index.html.

Acknowledgement

Special thanks to:

• Tyng-ruey Chuang from Institute of Information Science, Academia Sinica
• Te-en Lin from Endemic Species Research Institute, Council of Agriculture
• Guan-shuo Mai from Biodiversity Research Center, Academia Sinica
• Yi-hong Chang from Word Gleaner Ltd.

License

Biodiversity Analysis: Biodiversity Data Analysis and Visualization
Copyright (C) 2016 Yu-wen Pwu and Yun-chih Chen

This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program. If not, see http://www.gnu.org/licenses/.