Skip to content

PSAMM 0.29
Compare
Choose a tag to compare
@jonls jonls released this 18 Apr 18:48
· 886 commits to master since this release
v0.29
84e77e1
  • The tutorial in the PSAMM documentation has been updated and expanded to include additional information on using PSAMM for model curation and constraint-based analyses.
  • The experimental command psamm-sbml-model was added which makes it possible to run any command from psamm-model (e.g. fba, robustness, etc.) directly on an SBML file. For now this only supports SBML level 3 files with FBC. This provides a quick way of running basic analyses on SBML files. We still recommend importing the SBML file to YAML format with psamm-import for anyone wishing to make changes to a model.
  • Fixes access to charge parameter parsed from SBML files. The charge is now correctly imported with psamm-import.
  • Fixes import of compartments from SBML files. The empty boundary compartments are now no longer included in the import.
  • Fixes bug in writing the reaction flux limits sheet of the excelexport command.
  • The console command was changed to only provide the model variable since the metabolic model can easily be created.
Assets 2
Loading