Problem in SeqArray::seqVCF2GDS - Parsing the vcf header fails

[iaia87]

Erreur dans AsDataFrame(s[i], c(T = "ID", T = "Number", T = "Type", T = "Description", :
No 'ID'. Parsing the VCF header fails.

I don't know why I have this error, I create my vcf with SeqArray. I think that I have a problem in my header, but how to resolve that ?

I have looked in the github repository, but I don't find out the answer.

Here you are a little vision of the header in terminal window :

##fileformat=VCFv4.2
##fileDate=20211109
##source=SeqArray_Format_v1.0
##INFO=<>
##INFO=<>
##FILTER=<ID=PASS,Description="All filters passed">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT DEPAOUKW00002_DEPAOUKW00002 DEPAOUKW00003_DEPAOUKW00003 DEPAOUKW00005_DEPAOUKW00005 DEPAOUKW00008_DEPAOUKW00008 DEP
AOUKW00009_DEPAOUKW00009 DEPAOUKW00011_DEPAOUKW00011 [.....]
21 14625201 21:14625201:T:C T C 100 PASS filter=PASS GT 0/1 0/0 0/0 0/0 0/0 1/1 0/0 1/1 0/1 0/1 0/1 0/0 0/0 0/1 0/1 0/0 0/0 0/1 0/0 0/0 0/1 0/1 0/1 0/1 0/0 0/1 0/0 0/0 0/0 [.....]

Thanks for your help and for the package, I really enjoy !
Laura

[zhengxwen]

The line ##INFO=<> should be removed.
It is not a standard format.

[iaia87]

Thanks a lot !

I will try and I will tell you !

Have a good day,
Laura