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I used panno mode to transfer protein region to genomic region in reference genome hg19.
For example, I want to get information on gene 'KMT2B' 's transcript ID ENST00000222270
When I searched:
transvar panno -i 'KMT2B' --ensembl
I got :
input transcript gene strand coordinates(gDNA/cDNA/protein) region info
KMT2B . . . ././. . no_valid_transcript_found
I downloaded gtf file from https://zhouserver.research.chop.edu/TransVar/annotations/hg19.ensembl.gtf.gz.
I used panno mode to transfer protein region to genomic region in reference genome hg19.
For example, I want to get information on gene 'KMT2B' 's transcript ID
ENST00000222270
When I searched:
I got :
I downloaded gtf file from
https://zhouserver.research.chop.edu/TransVar/annotations/hg19.ensembl.gtf.gz
.ENST00000222270
is in the database:But not in the
transvardb
Can somebody tell me why? Thanks!
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