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Co-authored-by: Stephanie Spielman <[email protected]>
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allyhawkins and sjspielman authored Jul 23, 2024
1 parent a00fb97 commit 9c06bc9
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2 changes: 1 addition & 1 deletion docs/download_files.md
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Expand Up @@ -104,7 +104,7 @@ Each row corresponds to a unique sample/library combination and contains the fol
| `subdiagnosis` | Subcategory of diagnosis or mutation status (if applicable) |
| `disease_timing` | At what stage of disease the sample was obtained, either diagnosis or recurrence |
| `age` | Age provided by submitter |
| `age_timing` | Whether or not age is the age at diagnosis (`diagnosis`), age at collection (`collection`), or `unknown`|
| `age_timing` | Whether age is the age at diagnosis (`diagnosis`), age at collection (`collection`), or `unknown`|
| `sex` | Sex of patient that the sample was obtained from |
| `tissue_location` | Where in the body the tumor sample was located |
| `participant_id` | Unique id corresponding to the donor from which the sample was obtained |
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2 changes: 1 addition & 1 deletion docs/merged_objects.md
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Expand Up @@ -198,7 +198,7 @@ metadata(merged_sce)$sample_metadata # sample metadata only for projects with mu
| `submitter_id` | Original sample identifier from submitter |
| `submitter` | Submitter name/ID |
| `age` | Age provided by submitter |
| `age_timing` | Whether or not age is the age at diagnosis (`diagnosis`), age at collection (`collection`), or `unknown`|
| `age_timing` | Whether age is the age at diagnosis (`diagnosis`), age at collection (`collection`), or `unknown`|
| `sex` | Sex of patient that the sample was obtained from |
| `diagnosis` | Tumor type |
| `subdiagnosis` | Subcategory of diagnosis or mutation status (if applicable) |
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4 changes: 2 additions & 2 deletions docs/sce_file_contents.md
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Expand Up @@ -176,7 +176,7 @@ The following columns are included in the sample metadata data frame for all lib
| `submitter_id` | Original sample identifier from submitter |
| `submitter` | Submitter name/ID |
| `age` | Age provided by submitter |
| `age_timing` | Whether or not age is the age at diagnosis (`diagnosis`), age at collection (`collection`), or `unknown`|
| `age_timing` | Whether age is the age at diagnosis (`diagnosis`), age at collection (`collection`), or `unknown`|
| `sex` | Sex of patient that the sample was obtained from |
| `diagnosis` | Tumor type |
| `subdiagnosis` | Subcategory of diagnosis or mutation status (if applicable) |
Expand Down Expand Up @@ -391,7 +391,7 @@ The `AnnData` object also includes the following additional cell-level metadata
| `submitter_id` | Original sample identifier from submitter |
| `submitter` | Submitter name/ID |
| `age` | Age provided by submitter |
| `age_timing` | Whether or not age is the age at diagnosis (`diagnosis`), age at collection (`collection`), or `unknown`|
| `age_timing` | Whether age is the age at diagnosis (`diagnosis`), age at collection (`collection`), or `unknown`|
| `sex` | Sex of patient that the sample was obtained from |
| `diagnosis` | Tumor type |
| `subdiagnosis` | Subcategory of diagnosis or mutation status (if applicable) |
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