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Parse NAs when reading in json files #524

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merged 4 commits into from
Oct 26, 2023
Merged

Parse NAs when reading in json files #524

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a696075
parse NAs when reading in json
allyhawkins Oct 25, 2023
cd8135c
update parseNA to deal with non strings
allyhawkins Oct 26, 2023
d1fa12b
Use this and missing bracket
allyhawkins Oct 26, 2023
bddcbd1
new line
allyhawkins Oct 26, 2023
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15 changes: 11 additions & 4 deletions lib/Utils.groovy
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Original file line number Diff line number Diff line change
Expand Up @@ -15,6 +15,8 @@ class Utils {
*/
static def readMeta(file) {
def meta = new JsonSlurper().parse(file)
meta = meta.each{ key, value -> meta[key] = this.parseNA(value) }

return(meta)
}

Expand All @@ -38,8 +40,9 @@ class Utils {
*/
static def getMetaVal(file, key){
def obj = new JsonSlurper().parse(file)
def value = this.parseNA(obj[key])

return(obj[key])
return(value)
}


Expand All @@ -52,9 +55,13 @@ class Utils {
*/
static def parseNA(str) {
if (str){
str.toLowerCase() in ['na','n/a','nan']? '' : str
} else {
if (str instanceof String) { // has to be a string to have NA vals replaced
str.toLowerCase() in ['na','n/a','nan']? '' : str
} else { // not a string, so just return the unmodified value
str
}
} else { // all falsey values get turned into empty strings
''
}
}
}
}