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Roi from model bounds #152

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Roi from model bounds #152

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723abee
ENH: Initial Extension Setup
amymmorton Dec 11, 2024
f2ab019
ENH: New ui elements moduledev
amymmorton Dec 11, 2024
806f7fa
ENH: Initial mcode upload
amymmorton Dec 11, 2024
27f0a71
ENH: STL file load in
amymmorton Dec 11, 2024
19761ee
ENH: Delete demo files
amymmorton Dec 11, 2024
f613d4a
ENH: Print model RAS bounds
amymmorton Dec 11, 2024
038abca
ENH: ROI Generated from Model bounds
amymmorton Dec 11, 2024
c1ae7bd
ENH: Load Models(stl) from file and interate
amymmorton Dec 12, 2024
38fed97
COMP: Fix ruff settings to avoid enforcing pytest style
jcfr Dec 12, 2024
cdfcd23
STYLE: Fix roiFromModelBounds style to streamline maintenance
jcfr Dec 12, 2024
fcdf1e0
STYLE: Migrate functionality to logic
amymmorton Dec 13, 2024
ee6f64a
ENH:: Crop Volumes generated from roi
amymmorton Dec 13, 2024
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26 changes: 26 additions & 0 deletions SVolModelROI/subVol_roi_model/CMakeLists.txt
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cmake_minimum_required(VERSION 3.16.3...3.19.7 FATAL_ERROR)

project(subVol_roi_model)

#-----------------------------------------------------------------------------
# Extension meta-information
set(EXTENSION_HOMEPAGE "https://www.slicer.org/wiki/Documentation/Nightly/Extensions/subVol_roi_model")
set(EXTENSION_CONTRIBUTORS "John Doe (AnyWare Corp.)")
set(EXTENSION_DESCRIPTION "This is an example of a simple extension")
set(EXTENSION_ICONURL "https://www.example.com/Slicer/Extensions/subVol_roi_model.png")
set(EXTENSION_SCREENSHOTURLS "https://www.example.com/Slicer/Extensions/subVol_roi_model/Screenshots/1.png")
set(EXTENSION_DEPENDS "NA") # Specified as a list or "NA" if no dependencies

#-----------------------------------------------------------------------------
# Extension dependencies
find_package(Slicer REQUIRED)
include(${Slicer_USE_FILE})

#-----------------------------------------------------------------------------
# Extension modules
add_subdirectory(roiFromModelBounds)
## NEXT_MODULE

#-----------------------------------------------------------------------------
include(${Slicer_EXTENSION_GENERATE_CONFIG})
include(${Slicer_EXTENSION_CPACK})
31 changes: 31 additions & 0 deletions SVolModelROI/subVol_roi_model/roiFromModelBounds/CMakeLists.txt
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#-----------------------------------------------------------------------------
set(MODULE_NAME roiFromModelBounds)

#-----------------------------------------------------------------------------
set(MODULE_PYTHON_SCRIPTS
${MODULE_NAME}.py
)

set(MODULE_PYTHON_RESOURCES
Resources/Icons/${MODULE_NAME}.png
Resources/UI/${MODULE_NAME}.ui
)

#-----------------------------------------------------------------------------
slicerMacroBuildScriptedModule(
NAME ${MODULE_NAME}
SCRIPTS ${MODULE_PYTHON_SCRIPTS}
RESOURCES ${MODULE_PYTHON_RESOURCES}
WITH_GENERIC_TESTS
)

#-----------------------------------------------------------------------------
if(BUILD_TESTING)

# Register the unittest subclass in the main script as a ctest.
# Note that the test will also be available at runtime.
slicer_add_python_unittest(SCRIPT ${MODULE_NAME}.py)

# Additional build-time testing
add_subdirectory(Testing)
endif()
Binary file added ...lROI/subVol_roi_model/roiFromModelBounds/Resources/Icons/roiFromModelBounds.png
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254 changes: 254 additions & 0 deletions SVolModelROI/subVol_roi_model/roiFromModelBounds/Resources/UI/roiFromModelBounds.ui
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<?xml version="1.0" encoding="UTF-8"?>
<ui version="4.0">
<class>roiFromModelBounds</class>
<widget class="qMRMLWidget" name="roiFromModelBounds">
<property name="geometry">
<rect>
<x>0</x>
<y>0</y>
<width>451</width>
<height>459</height>
</rect>
</property>
<layout class="QVBoxLayout" name="verticalLayout">
<item>
<widget class="ctkCollapsibleButton" name="inputsCollapsibleButton">
<property name="text">
<string>ROI From Model</string>
</property>
<layout class="QFormLayout" name="formLayout_2">
<item row="0" column="0">
<widget class="QLabel" name="inputModel_label">
<property name="text">
<string>Input: Model Directory</string>
</property>
</widget>
</item>
<item row="0" column="1">
<widget class="ctkPathLineEdit" name="modelPath_lineEdit">
<property name="filters">
<set>ctkPathLineEdit::Dirs|ctkPathLineEdit::Drives|ctkPathLineEdit::Executable|ctkPathLineEdit::NoDot|ctkPathLineEdit::NoDotDot|ctkPathLineEdit::Readable</set>
</property>
<property name="SlicerParameterName" stdset="0">
<string>modelFile_path</string>
</property>
</widget>
</item>
<item row="3" column="0" colspan="2">
<widget class="QPushButton" name="showBounds_pb">
<property name="text">
<string>Show Model Bounds</string>
</property>
</widget>
</item>
<item row="1" column="0">
<widget class="QLabel" name="inputVol_label">
<property name="text">
<string>Input: Volume Node</string>
</property>
</widget>
</item>
<item row="1" column="1">
<widget class="qMRMLNodeComboBox" name="volumeSelector">
<property name="enabled">
<bool>true</bool>
</property>
<property name="nodeTypes">
<stringlist notr="true">
<string>vtkMRMLScalarVolumeNode</string>
</stringlist>
</property>
<property name="showChildNodeTypes">
<bool>true</bool>
</property>
<property name="hideChildNodeTypes">
<stringlist/>
</property>
<property name="noneEnabled">
<bool>true</bool>
</property>
<property name="interactionNodeSingletonTag">
<string>Singleton</string>
</property>
<property name="SlicerParamterName" stdset="0">
<string>inputVolume</string>
</property>
</widget>
</item>
</layout>
</widget>
</item>
<item>
<widget class="ctkCollapsibleButton" name="outputsCollapsibleButton">
<property name="text">
<string>SubVol From ROI</string>
</property>
<layout class="QFormLayout" name="formLayout_4">
<item row="0" column="0">
<widget class="QLabel" name="modelROI_label">
<property name="text">
<string>Model ROI</string>
</property>
</widget>
</item>
<item row="0" column="1">
<widget class="qMRMLNodeComboBox" name="modelROISelector">
<property name="enabled">
<bool>false</bool>
</property>
<property name="toolTip">
<string>Computed model ROI list</string>
</property>
<property name="nodeTypes">
<stringlist>
<string>vtkMRMLMarkupsROINode</string>
</stringlist>
</property>
<property name="showChildNodeTypes">
<bool>false</bool>
</property>
<property name="noneEnabled">
<bool>true</bool>
</property>
<property name="addEnabled">
<bool>true</bool>
</property>
<property name="removeEnabled">
<bool>true</bool>
</property>
<property name="SlicerParameterName" stdset="0">
<string>modelROI</string>
</property>
</widget>
</item>
<item row="1" column="0">
<widget class="QLabel" name="croppedVol_label">
<property name="text">
<string>Cropped volume:</string>
</property>
</widget>
</item>
<item row="1" column="1">
<widget class="qMRMLNodeComboBox" name="cropVolSelector">
<property name="enabled">
<bool>false</bool>
</property>
<property name="toolTip">
<string>Crop ROI bounds of InputVolume will be written into this volume</string>
</property>
<property name="nodeTypes">
<stringlist notr="true">
<string>vtkMRMLScalarVolumeNode</string>
</stringlist>
</property>
<property name="showChildNodeTypes">
<bool>false</bool>
</property>
<property name="noneEnabled">
<bool>true</bool>
</property>
<property name="addEnabled">
<bool>true</bool>
</property>
<property name="removeEnabled">
<bool>true</bool>
</property>
<property name="SlicerParameterName" stdset="0">
<string>croppedVolume</string>
</property>
</widget>
</item>
</layout>
</widget>
</item>
<item>
<spacer name="verticalSpacer">
<property name="orientation">
<enum>Qt::Vertical</enum>
</property>
<property name="sizeHint" stdset="0">
<size>
<width>20</width>
<height>40</height>
</size>
</property>
</spacer>
</item>
</layout>
</widget>
<customwidgets>
<customwidget>
<class>ctkCollapsibleButton</class>
<extends>QWidget</extends>
<header>ctkCollapsibleButton.h</header>
<container>1</container>
</customwidget>
<customwidget>
<class>ctkPathLineEdit</class>
<extends>QWidget</extends>
<header>ctkPathLineEdit.h</header>
</customwidget>
<customwidget>
<class>qMRMLNodeComboBox</class>
<extends>QWidget</extends>
<header>qMRMLNodeComboBox.h</header>
</customwidget>
<customwidget>
<class>qMRMLWidget</class>
<extends>QWidget</extends>
<header>qMRMLWidget.h</header>
<container>1</container>
</customwidget>
</customwidgets>
<resources/>
<connections>
<connection>
<sender>roiFromModelBounds</sender>
<signal>mrmlSceneChanged(vtkMRMLScene*)</signal>
<receiver>modelROISelector</receiver>
<slot>setMRMLScene(vtkMRMLScene*)</slot>
<hints>
<hint type="sourcelabel">
<x>82</x>
<y>135</y>
</hint>
<hint type="destinationlabel">
<x>326</x>
<y>237</y>
</hint>
</hints>
</connection>
<connection>
<sender>roiFromModelBounds</sender>
<signal>mrmlSceneChanged(vtkMRMLScene*)</signal>
<receiver>cropVolSelector</receiver>
<slot>setMRMLScene(vtkMRMLScene*)</slot>
<hints>
<hint type="sourcelabel">
<x>161</x>
<y>8</y>
</hint>
<hint type="destinationlabel">
<x>279</x>
<y>263</y>
</hint>
</hints>
</connection>
<connection>
<sender>roiFromModelBounds</sender>
<signal>mrmlSceneChanged(vtkMRMLScene*)</signal>
<receiver>volumeSelector</receiver>
<slot>setMRMLScene(vtkMRMLScene*)</slot>
<hints>
<hint type="sourcelabel">
<x>225</x>
<y>229</y>
</hint>
<hint type="destinationlabel">
<x>282</x>
<y>76</y>
</hint>
</hints>
</connection>
</connections>
</ui>
1 change: 1 addition & 0 deletions SVolModelROI/subVol_roi_model/roiFromModelBounds/Testing/CMakeLists.txt
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add_subdirectory(Python)
2 changes: 2 additions & 0 deletions SVolModelROI/subVol_roi_model/roiFromModelBounds/Testing/Python/CMakeLists.txt
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#slicer_add_python_unittest(SCRIPT ${MODULE_NAME}ModuleTest.py)
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