corral

Dimensionality reduction and batch integration methods for single cell data

corral is a package to perform correspondence analysis on count data, particularly for single-cell (e.g., RNA-seq).

It can be used on a single table for dimensionality reduction, or it can be used for integration across batches, samples, and modes.

To install the dev version: devtools::install_github('laurenhsu1/corral')

Or it can be installed with BiocManager::install("laurenhsu1/corral", dependencies = TRUE)

How to

The package contains two main function calls:

1. corral for dimensionality reduction on a single table
2. corralm for alignment and batch integration of multiple tables

See the vignettes for details on outputs and how to plot.