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@GlobalPneumoSeq

Global Pneumococcal Sequencing (GPS) Project

A worldwide genomic survey of the impact of vaccination on the pathogen population

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  1. gps-pipeline gps-pipeline Public

    Nextflow Pipeline for processing Streptococcus pneumoniae sequencing raw reads (FASTQ files) by the GPS Project (Global Pneumococcal Sequencing Project)

    Nextflow 14 8

  2. seroba seroba Public

    Forked from sanger-pathogens/seroba

    A Fork of the Original SeroBA

    Python 2 2

Repositories

Showing 4 of 4 repositories
  • gps-pipeline Public

    Nextflow Pipeline for processing Streptococcus pneumoniae sequencing raw reads (FASTQ files) by the GPS Project (Global Pneumococcal Sequencing Project)

    GlobalPneumoSeq/gps-pipeline’s past year of commit activity
    Nextflow 14 GPL-3.0 8 0 0 Updated Jan 14, 2025
  • seroba Public Forked from sanger-pathogens/seroba

    A Fork of the Original SeroBA

    GlobalPneumoSeq/seroba’s past year of commit activity
    Python 2 20 0 0 Updated Jan 9, 2025
  • spn-pbp-amr Public Forked from pathogenwatch-oss/spn-resistance-pbp

    PBP resistance assignment for Streptococcus pneumoniae

    GlobalPneumoSeq/spn-pbp-amr’s past year of commit activity
    Perl 0 MIT 2 0 0 Updated Jan 6, 2025
  • Gladstone-et-al-MGEN-2019 Public archive

    Recombination masked lineage alignment

    GlobalPneumoSeq/Gladstone-et-al-MGEN-2019’s past year of commit activity
    0 0 0 0 Updated Sep 23, 2019

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