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Feature parpe to pypesto history #353

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Feature parpe to pypesto history #353

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Commits on Jun 28, 2021

  1. SuperMUC build script: skip boost

    @dweindl
    dweindl committed Jun 28, 2021
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  2. Fix race condition with parallel HDF5 calls (#345) 

    * Fix race condition with parallel HDF5 calls

Add some locks, in particular for H5Location::nameExists.
Also remove some unnecessary H5File::getId calls.

* Safely close HDF5 files

* Check pthread_create retval

* cleanup
    @dweindl
    dweindl authored Jun 28, 2021
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Commits on Jul 1, 2021

  1. Fix HDF5 generation for state reinitialization with estimated initial… 

    … conditions (#344)
    @dweindl
    dweindl committed Jul 1, 2021
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  2. Cleanup PEtab import (#346)

    @dweindl
    dweindl authored Jul 1, 2021
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  3. Update AMICI to develop@8ef53c88 (#347) 

    git subrepo clone --branch=develop --force [email protected]:AMICI-dev/AMICI.git deps/AMICI 

subrepo:
  subdir:   "deps/AMICI"
  merged:   "8ef53c88"
upstream:
  origin:   "[email protected]:AMICI-dev/AMICI.git"
  branch:   "develop"
  commit:   "8ef53c88"
git-subrepo:
  version:  "0.4.1"
  origin:   "https://github.com/ingydotnet/git-subrepo"
  commit:   "a04d8c2"
    @dweindl
    dweindl authored Jul 1, 2021
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  4. Fixup AMICI 

    AMICI-dev/AMICI#1522
    @dweindl
    dweindl committed Jul 1, 2021
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Commits on Jul 13, 2021

  1. Merge remote-tracking branch 'origin/develop' into develop 

    # Conflicts:
#	deps/AMICI/.gitrepo
#	deps/AMICI/python/amici/__init__.py
    @PaulJonasJost
    PaulJonasJost committed Jul 13, 2021
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  2. added parPE to pyPESTO optimization + history converter.

    @PaulJonasJost
    PaulJonasJost committed Jul 13, 2021
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  3. updated to pep8 standard

    @PaulJonasJost
    PaulJonasJost committed Jul 13, 2021
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  4. Merge branch 'develop' into feature_parpe_to_pypesto_history

    @dweindl
    dweindl authored Jul 13, 2021
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Commits on Oct 4, 2021

  1. Merge branch 'develop' into feature_parpe_to_pypesto_history

    @dweindl
    dweindl authored Oct 4, 2021
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Commits on Sep 8, 2022

  1. Merge branch 'develop' into feature_parpe_to_pypesto_history

    @dweindl
    dweindl authored Sep 8, 2022
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  2. Cleanup; proper command line interface

    @dweindl
    dweindl committed Sep 8, 2022
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Commits on Sep 9, 2022

  1. Merge branch 'develop' into feature_parpe_to_pypesto_history

    @dweindl
    dweindl authored Sep 9, 2022
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  2. fixup,cleanup

    @dweindl
    dweindl committed Sep 9, 2022
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  3. Merge branch 'develop' into feature_parpe_to_pypesto_history

    @dweindl
    dweindl authored Sep 9, 2022
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