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@IDEELResearch

IDEEL - Infectious Disease Epidemiology and Ecology Lab

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  1. vcfdo vcfdo Public

    Some tools for processing and annotating VCF files, with focus on Plasmodium spp

    Python 6 4

  2. nanopore-pipelines nanopore-pipelines Public

    Scripts and pipelines for analyzing Oxford Nanopore long-read data

    Shell 4 3

  3. NGS_Align_QC_Pipelines NGS_Align_QC_Pipelines Public

    IDEEL pipelines for next-generation sequence quality control and analysis

    Python 3 1

  4. vcfRmanip vcfRmanip Public

    Various interactive tools for wrangling vcf data with a focus on malaria (dependent on vcfR).

    R 1 1

  5. hbv_hover hbv_hover Public

    Analysis of households and individuals enrolled in HOVER-HBV study in Kinshasa, DRC

    R 1 1

  6. PanPlasm_Spec PanPlasm_Spec Public

    Identifying Plasmodium primers for NGS speciation

Repositories

Showing 10 of 25 repositories
  • dhs_hbv Public

    Analysis of hepatitis B virus in children in the Democratic Republic of Congo

    IDEELResearch/dhs_hbv’s past year of commit activity
    R 0 MIT 0 0 0 Updated Dec 16, 2024
  • PvMIPs Public

    Scripts used to design and analyze molecular inversion probes for Plasmodium vivax

    IDEELResearch/PvMIPs’s past year of commit activity
    HTML 0 0 0 0 Updated Nov 5, 2024
  • scrape Public

    Spatial Covariate Retrieval and Preprocessing for Evaluation

    IDEELResearch/scrape’s past year of commit activity
    R 0 0 2 0 Updated Oct 7, 2024
  • stitch Public

    Spatial Temporal Integrated Trends Compilation Hub

    IDEELResearch/stitch’s past year of commit activity
    R 0 0 6 0 Updated Sep 26, 2024
  • tpallidum_genomics Public
    IDEELResearch/tpallidum_genomics’s past year of commit activity
    Shell 0 1 0 0 Updated Sep 19, 2024
  • PmPopGen Public

    Code used for analysis of African Plasmodium malariae whole genomes derived from hybrid capture enrichment.

    IDEELResearch/PmPopGen’s past year of commit activity
    R 0 0 0 0 Updated Sep 19, 2024
  • Luminex Public template
    IDEELResearch/Luminex’s past year of commit activity
    0 MIT 0 0 0 Updated Jun 14, 2024
  • RTSS_Kisumu_Schisto Public
    IDEELResearch/RTSS_Kisumu_Schisto’s past year of commit activity
    R 0 MIT 0 0 0 Updated Apr 24, 2024
  • hbv_hover Public

    Analysis of households and individuals enrolled in HOVER-HBV study in Kinshasa, DRC

    IDEELResearch/hbv_hover’s past year of commit activity
    R 1 1 0 0 Updated Apr 5, 2024
  • animalaria Public
    IDEELResearch/animalaria’s past year of commit activity
    R 0 MIT 0 0 0 Updated Mar 27, 2024
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