Merge branch 'main' into develop #336
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: Unit tests without external tools | |
on: | |
push: | |
branches: [ main, develop ] | |
pull_request: | |
branches: [ main, develop ] | |
jobs: | |
tests: | |
strategy: | |
matrix: | |
platform: [ubuntu-latest, macos-latest] | |
python-version: [3.7] | |
runs-on: ${{ matrix.platform }} | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set conda package directory | |
run: | | |
mkdir /tmp/condapkgs | |
echo "CONDA_PKGS_DIRS=/tmp/condapkgs" >> $GITHUB_ENV | |
- name: Set up Python ${{ matrix.python-version }} | |
run: | | |
$CONDA/bin/conda create -p /tmp/condaenv python==${{ matrix.python-version }}'.*' setuptools"==52.0" protobuf"<=3.20.1" | |
- name: Activate conda environment | |
run: | | |
echo "/tmp/condaenv/bin" >> $GITHUB_PATH | |
export PATH="/tmp/condaenv/bin:$PATH" | |
- name: Install epytope | |
run: | | |
pip install . | |
- name: Install Test dependencies | |
run: conda install -p /tmp/condaenv -c conda-forge -c bioconda nose nose-exclude glpk | |
- name: Run Tests | |
run: nosetests --exclude-dir=epytope/test/external epytope |