Add machine-readable property definitions to repository

.github/workflows/ci.yml

@@ -16,6 +16,8 @@ jobs:
 
     steps:
     - uses: actions/checkout@v2
+      with:
+        submodules: 'true'
     - name: Set up Python 3.8
       uses: actions/setup-python@v1
       with:
@@ -31,6 +33,8 @@ jobs:
     timeout-minutes: 5
     steps:
     - uses: actions/checkout@v2
+      with:
+        submodules: 'true'
     - name: Set up JDK
       uses: actions/setup-java@v1
       with:
@@ -43,6 +47,8 @@ jobs:
     timeout-minutes: 5
     steps:
     - uses: actions/checkout@v2
+      with:
+        submodules: 'true'
     - run: make audit_authors
 
   audit-spelling:
@@ -51,6 +57,8 @@ jobs:
     timeout-minutes: 5
     steps:
     - uses: actions/checkout@v2
+      with:
+        submodules: 'true'
     - run: make audit_spelling
 
   audit-schemas:
@@ -59,4 +67,8 @@ jobs:
     timeout-minutes: 5
     steps:
     - uses: actions/checkout@v2
+      with:
+        submodules: 'true'
+    - name: Install dependencies
+      run: pip install markdown python-markdown-math
     - run: make audit_schemas

.gitignore

@@ -5,3 +5,5 @@ Makeconf*
 .idea/
 .vscode/
 .DS_Store
+schemas/output
+schemas/example/output

.gitmodules

@@ -0,0 +1,3 @@
+[submodule "dependencies/submodules/optimade-property-tools"]
+	path = dependencies/submodules/optimade-property-tools
+	url = https://github.com/Materials-Consortia/optimade-property-tools.git

.pre-commit-config.yaml

@@ -7,6 +7,7 @@ repos:
       (?x)^(
         tests/inputs/various-whitespace.filter|
         tests/inputs/fuzzystring-leading-trailing-spaces.filter|
+        external/GNU_Units/definitions.units|
         units/definitions.units|
         .words.lst
       )$

.words.lst

@@ -215,6 +215,8 @@ xyz
 yacc
 yb
 zeo
-ångström
+zeolites
 ångström
 ångström
+ångström
+incrementing

GNUmakefile

@@ -19,6 +19,26 @@
 # - spell: runs an interactive spellchecker
 #
 #
+# Targets for generating schemas
+################################
+#
+# - schemas <schemas_html_pretty=true> <schemas_html_ext=true>
+#
+#     compile YAML-formatted source files for schemas,
+#     including property definitions, units, and constants
+#     in the schemas/src directory into JSON schema format
+#     placed in the output directory: schemas/output
+#
+#     parameters:
+#        - schemas_html_pretty=true applies OPTIMADE styling to the html output
+#        - schemas_html_ext=true generates html files with .html extensions also
+#              for files meant to be served without extensions, which is useful
+#              for hosting, e.g., on GitHub that automatically redirects URLs without extensions.
+#
+#     For documentation pages hosted on schema.optimade.org use:
+#         make schemas schemas_html_pretty=true schemas_html_ext=true
+#
+#
 # Extracting machine-readable parts of the specification
 ########################################################
 #

README.md

@@ -34,9 +34,9 @@ If this is a pre-release, implementations are also encouraged to support the lat
 ## Licensing of the unit definitions database `definitions.units`
 
 The OPTIMADE standard refers to a specific version of the `definitions.units` database included with the source distribution of GNU Units.
-This file is included in the OPTIMADE repository under the subdirectory [units](units).
+This file is included in the OPTIMADE repository under the subdirectory [external/GNU_Units](external/GNU_Units).
 The file is licensed separately from other files in the repository: it is available under the GNU General Public License (GPL).
-Full information on how the file is licensed is available in the [header of the file](units/definitions.units) and the license file included in that directory, [COPYING](units/COPYING).
+Full information on how the file is licensed is available in the [header of the file](external/GNU_Units/definitions.units) and the license file included in that directory, [COPYING](external/GNU_Units/COPYING).
 
 The following does not constitute legal advice; however, we believe implementations under other licenses can use this file if:
 

dependencies/installers/Debian-10/install.sh

@@ -0,0 +1,19 @@
+#! /bin/sh
+
+sudo apt-get install -y \
+    ant \
+    default-jdk \
+    make \
+    patch \
+    python3-mdx-math \
+    unzip \
+;
+
+# Required by the 'optimade-property-tools' submodule
+sudo apt-get install -y \
+    python3-jsonschema \
+    python3-markdown \
+    python3-mdx-math \
+    python3-pygments \
+    python3-yaml \
+;

dependencies/installers/Debian-11

@@ -0,0 +1 @@
+Debian-10/

dependencies/installers/Debian-12

@@ -0,0 +1 @@
+Debian-10/

external/README.md

@@ -0,0 +1,3 @@
+This directory contains a collection of subdirectories containing documents that are relevant to the OPTIMADE standard.
+Please note that the files in these subdirectories are subject to separate licensing agreements that differ from those of other OPTIMADE files.
+Please refer to each subdirectory for specific license information.

external/json-api/LICENSE

@@ -0,0 +1,33 @@
+Creative Commons Legal Code
+
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