Correct finding coordrefs in cf.aggregate
#236
Workflow file for this run
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# A GitHub Action to test a source distribution created from the repo state. | |
name: Test source distribution | |
# Triggers the workflow on PR events for the main branch (only) | |
on: | |
pull_request: | |
# 'reopened' enables manual retrigger via close & re-open. Disable for all | |
# edits to manage limited resource (PRs often change before merge-ready). | |
types: [opened, reopened, ready_for_review] | |
branches: | |
- main | |
jobs: | |
source-dist-test: | |
# Set-up the build matrix. | |
# Note: only use one Python version, but it is easier to update in future | |
# by setting it here and refering to it as ${{ matrix.python-version }}. | |
strategy: | |
matrix: | |
os: [ubuntu-latest, macos-latest] | |
python-version: ["3.8"] | |
runs-on: ${{ matrix.os }} | |
# The sequence of tasks that will be executed as part of this job: | |
steps: | |
# Need to checkout the repo in order to build the source dist from it, | |
# but don't install codebase directly in this case, only test the sdist. | |
- name: Checkout cf-python | |
uses: actions/checkout@v3 | |
with: | |
path: main | |
# Provide a notification message | |
- name: Notify about setup | |
run: echo Now setting up the environment for cf-python... | |
- name: Checkout the current cfdm main to use as the dependency | |
uses: actions/checkout@v3 | |
with: | |
repository: NCAS-CMS/cfdm | |
path: cfdm | |
# Prepare to test the source dist using the given Python version | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
# Setup conda, which is the simplest way to access all dependencies, | |
# especially as some are C-based so otherwise difficult to setup. | |
- name: Setup Miniconda | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
auto-update-conda: true | |
miniconda-version: "latest" | |
activate-environment: cf-latest | |
python-version: ${{ matrix.python-version }} | |
channels: ncas, conda-forge | |
# Ensure shell is configured with conda and pip correctly activated. | |
- name: Check conda and pip config | |
shell: bash -l {0} | |
run: | | |
echo "*Conda report:*" | |
conda info | |
conda list | |
conda config --show-sources | |
conda config --show | |
echo "*Pip report:*" | |
pip --version | |
pip list | |
# Install cf-python dependencies, excluding cfunits and cfdm, pre-testing | |
# We do so with conda (and pip) which was setup in a previous step. | |
- name: Install dependencies excluding the NCAS CF Data Tools libraries | |
shell: bash -l {0} | |
run: | | |
conda install -c ncas -c conda-forge cf-plot udunits2=2.2.25 | |
conda install -c conda-forge mpich esmpy | |
conda install scipy matplotlib dask | |
pip install pycodestyle | |
# Install cfunits and cfdm (from development main branch) separately, | |
# since it is most robust to test a no-dependency installation of cf, then | |
# finally install the cf-python development version, but only in order | |
# to generate the test_file.nc file for testing, not as the cf to test. | |
- name: Install cfunits then development versions of cfdm and cf-python | |
shell: bash -l {0} | |
run: | | |
pip install cfunits | |
cd ${{ github.workspace }}/cfdm | |
pip install -e . | |
cd ${{ github.workspace }}/main | |
# This next (very meta) command is needed to install requirements.txt | |
# spec (next) in the conda env rather than globally to the PYTHONPATH: | |
conda install pip | |
pip install -r requirements.txt | |
# Installing cf now but only to be able to run setup_create_field.py | |
# next, in order to generate the test_file.nc required to test on | |
pip install --no-deps -e . | |
# Provide another notification message | |
- name: Notify about starting the sdist test | |
run: echo Setup complete. Now creating and testing the source dist... | |
# Create netCDF files needed for testing. A separate step is required | |
# for this so the files can be registered and recognised first; locally | |
# they are created and used on-the-fly by 'run_tests_and_coverage'. | |
- name: Create netCDF test files, e.g. test_file.nc | |
shell: bash -l {0} | |
run: | | |
cd ${{ github.workspace }}/main/cf/test | |
python create_test_files.py | |
python setup_create_field.py | |
ls -la | |
- name: Create the source distribution and store the version as an env var | |
shell: bash -l {0} | |
run: | | |
cd ${{ github.workspace }}/main | |
python setup.py sdist | |
# Get the cf-python version and put it in an environment variable for | |
# the next step (only available in steps subsequent to one set in). | |
echo "CF_VERSION=$(python setup.py --version 2> /dev/null)" >> $GITHUB_ENV | |
- name: Test the source distribution | |
shell: bash -l {0} | |
run: | | |
cd ${{ github.workspace }}/main | |
./test_release $CF_VERSION | |
# End with a message indicating the sdist test has completed its run | |
- name: Notify about a completed run | |
run: | | |
echo The test of the latest cf-python source distribution has now | |
echo completed and you may inspect the results. |