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Add current steps to sample details #167

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Add current steps to sample details #167

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d52f11c
Add current steps to sample details
aanil Dec 18, 2024
6b098c8
Pass correct param
aanil Dec 18, 2024
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13 changes: 12 additions & 1 deletion LIMS2DB/classes.py
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Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@
Researcher,
ReagentType,
)
from genologics_sql.queries import get_children_processes, get_processes_in_history
from genologics_sql.queries import get_children_processes, get_processes_in_history, get_currentsteps_protocol_for_sample, get_protocolstep_details
from LIMS2DB.diff import diff_objects
from requests import get as rget
from sqlalchemy import text
Expand Down Expand Up @@ -878,6 +878,17 @@ def get_samples(self):

self.get_initial_qc(sample)
self.get_library_preps(sample)
self.get_current_step_sample(sample)

def get_current_step_sample(self, sample):
""" Get the current steps a sample is in"""
sample_in_steps = get_currentsteps_protocol_for_sample(self.session, sample.sampleid)
if sample_in_steps:
current_steps = {}
for step in sample_in_steps:
step_details = get_protocolstep_details(self.session, step[0])[0]
current_steps[step_details[0]] = {"protocol_name": step_details[1], "is_qc_protocol": step_details[2]}
self.obj["samples"][sample.name]["current_step"] = current_steps

def get_initial_qc(self, sample):
self.obj["samples"][sample.name]["initial_qc"] = {}
Expand Down