Add Report Transfer utilities [used in 10x for now]

[glrs]

This pull request introduces a new report transfer feature and refactors the run_sample and sample_file_handler modules to support this functionality. The changes include adding a new utility function for transferring reports, updating the sample processing workflow, and enhancing the file handling capabilities.

New Features:

• Report Transfer Functionality:
  • Added a new function transfer_report in lib/module_utils/report_transfer.py to handle the transfer of reports using rsync.
  • Integrated transfer_report into the post_process method of run_sample to transfer reports after processing.

Refactoring and Enhancements:

• Run Sample Module:

  • Moved the initialization of SampleFileHandler to a later point in the constructor of run_sample.py to ensure proper setup. [1] [2]
  • Added logging for missing pipeline information in the process method to handle errors gracefully.
  • Updated the pre_process method to include additional logging paths.

• Sample File Handler Module:

  • Enhanced SampleFileHandler to track pipeline information and manage report paths. [1] [2]
  • Added methods check_run_success and extract_report_path to verify the success of the run and extract report paths from output logs.