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Update to interact with YggDB and follow AbstractProject changes #23

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merged 1 commit into from
Nov 20, 2024

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@glrs glrs commented Nov 20, 2024

This pull request includes several updates to the lib/realms/tenx module to enhance database integration and improve method naming consistency. The most important changes are summarized below:

Enhancements to Database Integration:

  • lib/realms/tenx/run_sample.py: Added project_id initialization in the __init__ method to ensure it is always available and updated the status method to reflect this change when updating the sample status in the database. [1] [2]

  • lib/realms/tenx/tenx_project.py: Added calls to initialize_project_in_db and add_samples_to_project_in_db in the __init__ and launch methods, respectively, to ensure project and sample data are properly initialized and added to the database. [1] [2]

Method Naming Consistency:

@glrs glrs merged commit 3d68887 into NationalGenomicsInfrastructure:main Nov 20, 2024
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