Update to interact with YggDB and follow AbstractProject changes #23
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This pull request includes several updates to the
lib/realms/tenx
module to enhance database integration and improve method naming consistency. The most important changes are summarized below:Enhancements to Database Integration:
lib/realms/tenx/run_sample.py
: Addedproject_id
initialization in the__init__
method to ensure it is always available and updated thestatus
method to reflect this change when updating the sample status in the database. [1] [2]lib/realms/tenx/tenx_project.py
: Added calls toinitialize_project_in_db
andadd_samples_to_project_in_db
in the__init__
andlaunch
methods, respectively, to ensure project and sample data are properly initialized and added to the database. [1] [2]Method Naming Consistency:
lib/realms/tenx/tenx_project.py
: Renamed_check_required_fields
tocheck_required_fields
to reflect the change in the abstract class.