Code

For 1.1.3 release#263

Code

Merged

sanjayankur31 merged 36 commits intomasterNeuroML/pyNeuroML:masterfrom developmentNeuroML/pyNeuroML:developmentCopy head branch name to clipboardOct 20, 2023

+466-377

Commits

Commits on Sep 22, 2023

• To v1.1.3

  pgleeson

  committed
  c6ac0f9

• Use jnml jar v0.13.0

  pgleeson

  committed
  7e73bf3

Commits on Sep 29, 2023

• feat(vispy-plotter): use instance meshes to improve performance

  sanjayankur31

  committed
  f9aa70b

• feat(vispy-plotter): remove text in plotter window

  Show description for afbaed6
  sanjayankur31

  committed
  afbaed6

• feat(vispy-plotter): update main function for detailed plotting

  sanjayankur31

  committed
  bd87e80

Commits on Sep 30, 2023

• feat(vispy-plotter): complete instance mesh implementation

  sanjayankur31

  committed
  e3755ec

Commits on Oct 1, 2023

• fix(vispy-plotter): update schematic method

  Show description for aaafbae
  sanjayankur31

  committed
  aaafbae

• feat(deps): include pyopengl

  Show description for bef0d82
  sanjayankur31

  committed
  bef0d82

• chore(vispy): select opengl when creating new canvas

  sanjayankur31

  committed
  664da55

• test(vispy): turn off gui

  sanjayankur31

  committed
  20c157e

Commits on Oct 2, 2023

• feat(vispy): add progressbar to give user feedback on what's happening

  sanjayankur31

  committed
  c2d3216

• chore(plotter): stop printing namespace

  sanjayankur31

  committed
  f2281f6

• chore(mesh): add todo

  sanjayankur31

  committed
  0d38b22

• fix(vispy-plotter): fix ref axes

  sanjayankur31

  committed
  eae12e1

• chore(deps): remove unused pandas

  sanjayankur31

  committed
  2b67212

• feat(vispy): include scipy requirement

  sanjayankur31

  committed
  e07cba8

• Merge pull request #261 from NeuroML/chore/drop-pandas

  Show description for eab99d7
  sanjayankur31

  authored
  eab99d7

• Merge branch 'development' into feat/vispy-performance

  sanjayankur31

  committed
  61d83da

Commits on Oct 3, 2023

• refactor(plotting): split out on-demand loading to separate function

  Show description for 770c996
  sanjayankur31

  committed
  770c996

• chore: move util to plotting utils

  sanjayankur31

  committed
  784fd15

Commits on Oct 4, 2023

• feat: centralize mesh heuristic

  Show description for fef3322
  sanjayankur31

  committed
  fef3322

• fix(mesh-plotter): respect min width argument

  sanjayankur31

  committed
  4e26db9

• chore: make logging debug rather than info

  Show description for 3782ab9
  sanjayankur31

  committed
  3782ab9

• chore: include PyOpenGL-accelerate for vispy extra

  sanjayankur31

  committed
  c5bcaf2

• fix(vispy-plotter): fix calculation of total cells/segments

  sanjayankur31

  committed
  2d52c2d

• fix(mesh-maker): handle special case of single compartmental cell

  Show description for f2abed7
  sanjayankur31

  committed
  f2abed7

• fix(3dplotter): disable optimized loading for older HDF5 compatibility

  sanjayankur31

  committed
  d1568e6

• chore: log debug mesh addition for each segment

  Show description for 9512426
  sanjayankur31

  committed
  9512426

• fix(vispy-plotter): handle point cells

  Show description for 3a9e57d
  sanjayankur31

  committed
  3a9e57d

• fix(2d-plotter): also tweak for hdf5 files

  sanjayankur31

  committed
  ff794ba

Commits on Oct 10, 2023

• feat(vispy-plotter): implement heuristic to ensure performance

  Show description for 2d62eb4
  sanjayankur31

  committed
  2d62eb4

• fix(vispy-plotter): correct variable declaration

  sanjayankur31

  committed
  1aa7de0

• chore(channel-density-plots): add link to matplotlib colormaps

  sanjayankur31

  committed
  8ee1189

Commits on Oct 18, 2023

• docs: add vispy and plotly modules

  sanjayankur31

  committed
  86f04b5

Commits on Oct 19, 2023

• feat(vispy): update deps to use pyqt6, supply min vispy version

  Show description for 1c64f84
  sanjayankur31

  committed
  1c64f84

• Merge pull request #260 from NeuroML/feat/vispy-performance

  Show description for 03e3230
  sanjayankur31

  authored
  03e3230